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Sample GSM71141 Query DataSets for GSM71141
Status Public on Aug 25, 2005
Title OWB-D stress replicate 3
Sample type RNA
 
Source name whole seedling
Organism Hordeum vulgare
Characteristics cv. Oregon Wolfe Barley Dominant
drought stress
Extracted molecule total RNA
Extraction protocol Five seedlings were used for RNA extraction
Label biotin
Label protocol Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description drought stress
Data processing GCOS 1.2
 
Submission date Aug 19, 2005
Last update date Aug 25, 2005
Contact name xinping cui
E-mail(s) xinping.cui@ucr.edu
Phone 9518272563
Fax 9518273286
Organization name University of California,Riverside
Department Statistics
Street address Department of Statistics, University of California, Riverside
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
 
Platform ID GPL1340
Series (1)
GSE3170 Barley single feature polymorphisms and drought stress gene expression

Data table header descriptions
ID_REF
VALUE GCOS1.2-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 168.2 P 0.009337
AFFX-BioB-M_at 125.2 P 0.001248
AFFX-BioB-3_at 116.8 P 0.004017
AFFX-BioC-5_at 307.7 P 0.000095
AFFX-BioC-3_at 402.3 P 0.000081
AFFX-BioDn-5_at 782 P 0.000044
AFFX-BioDn-3_at 2281.1 P 0.00011
AFFX-CreX-5_at 4149.9 P 0.000044
AFFX-CreX-3_at 7333.3 P 0.000044
AFFX-DapX-5_at 321.7 P 0.00006
AFFX-DapX-M_at 874.2 P 0.000297
AFFX-DapX-3_at 1981.7 P 0.000044
AFFX-LysX-5_at 62.2 P 0.000446
AFFX-LysX-M_at 91.7 P 0.01667
AFFX-LysX-3_at 334.9 P 0.000081
AFFX-PheX-5_at 84 P 0.00762
AFFX-PheX-M_at 121.6 P 0.000972
AFFX-PheX-3_at 235 P 0.00007
AFFX-ThrX-5_at 138 P 0.00034
AFFX-ThrX-M_at 229.8 P 0.00007

Total number of rows: 22840

Table truncated, full table size 704 Kbytes.




Supplementary file Size Download File type/resource
GSM71141.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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