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Sample GSM71140 Query DataSets for GSM71140
Status Public on Aug 25, 2005
Title OWB-D stress replicate 2
Sample type RNA
Source name whole seedling
Organism Hordeum vulgare
Characteristics cv. Oregon Wolfe Barley Dominant
drought stress
Extracted molecule total RNA
Extraction protocol Five seedlings were used for RNA extraction
Label biotin
Label protocol Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description drought stress
Data processing GCOS 1.2
Submission date Aug 19, 2005
Last update date Aug 25, 2005
Contact name xinping cui
Phone 9518272563
Fax 9518273286
Organization name University of California,Riverside
Department Statistics
Street address Department of Statistics, University of California, Riverside
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
Platform ID GPL1340
Series (1)
GSE3170 Barley single feature polymorphisms and drought stress gene expression

Data table header descriptions
VALUE GCOS1.2-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 245.6 P 0.00141
AFFX-BioB-M_at 145.4 P 0.000509
AFFX-BioB-3_at 129 P 0.000258
AFFX-BioC-5_at 390.6 P 0.000095
AFFX-BioC-3_at 371.3 P 0.00007
AFFX-BioDn-5_at 390.4 P 0.00007
AFFX-BioDn-3_at 2227.6 P 0.00007
AFFX-CreX-5_at 4475.4 P 0.000044
AFFX-CreX-3_at 7459.1 P 0.000044
AFFX-DapX-5_at 585.3 P 0.00006
AFFX-DapX-M_at 1395.4 P 0.000095
AFFX-DapX-3_at 2633.9 P 0.000044
AFFX-LysX-5_at 88.8 P 0.000052
AFFX-LysX-M_at 164.2 P 0.001102
AFFX-LysX-3_at 540.5 P 0.000052
AFFX-PheX-5_at 151.4 P 0.000225
AFFX-PheX-M_at 193.2 P 0.000509
AFFX-PheX-3_at 288.3 P 0.00007
AFFX-ThrX-5_at 217.8 P 0.00034
AFFX-ThrX-M_at 390.6 P 0.00006

Total number of rows: 22840

Table truncated, full table size 704 Kbytes.

Supplementary file Size Download File type/resource
GSM71140.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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