|
| Status |
Public on Nov 15, 2023 |
| Title |
CNS-tumor_pediatric-LGG_37486 |
| Sample type |
genomic |
| |
|
| Source name |
CNS tumor
|
| Organism |
Homo sapiens |
| Characteristics |
Sex: Male
age: 12
location: infratentorial
tumor subgroup: low grade glioma
tissue: CNS tumor
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Extraction of high molecular weight DNA from fresh frozen or FFPE tumor samples was carried out using the Maxwell RSC Tissue DNA kit or the Maxwell RSC DNA FFPE kit, respectively.
|
| Label |
biotin/DNP
|
| Label protocol |
Illumina
|
| |
|
| Hybridization protocol |
Illumina
|
| Scan protocol |
Illumina iScan System
|
| Data processing |
Raw signal intensities were obtained from IDAT-files using the minfi Bioconductor package. Signal intensities were normalized per sample by performing a background correction (shifting of mean negative control probe intensity to 0) and a dye-bias correction (scaling of mean normalization control probe intensity to 10,000). Standard beta-values were calculated.
|
| |
|
| Submission date |
Mar 23, 2023 |
| Last update date |
Nov 15, 2023 |
| Contact name |
Martin Sill |
| E-mail(s) |
m.sill@dkfz.de
|
| Organization name |
DKFZ
|
| Department |
Division of Pediatric Neurooncology
|
| Street address |
Im Neuenheimer Feld 280
|
| City |
Heidelberg |
| ZIP/Postal code |
69120 |
| Country |
Germany |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE228100 |
LOGGIC Core BioClinical Data Bank: Added clinical value of RNA-Seq in an international molecular diagnostic registry for pediatric low-grade glioma patients |
|
