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Sample GSM71139 Query DataSets for GSM71139
Status Public on Aug 25, 2005
Title OWB-D stress replicate 1
Sample type RNA
 
Source name whole seedling
Organism Hordeum vulgare
Characteristics cv. Oregon Wolfe Barley Dominant
drought stress
Extracted molecule total RNA
Extraction protocol Five seedlings were used for RNA extraction
Label biotin
Label protocol Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description drought stress
Data processing GCOS 1.2
 
Submission date Aug 19, 2005
Last update date Aug 25, 2005
Contact name xinping cui
E-mail(s) xinping.cui@ucr.edu
Phone 9518272563
Fax 9518273286
Organization name University of California,Riverside
Department Statistics
Street address Department of Statistics, University of California, Riverside
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
 
Platform ID GPL1340
Series (1)
GSE3170 Barley single feature polymorphisms and drought stress gene expression

Data table header descriptions
ID_REF
VALUE GCOS1.2-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 201.8 P 0.010317
AFFX-BioB-M_at 183.5 P 0.000857
AFFX-BioB-3_at 158.8 P 0.000446
AFFX-BioC-5_at 365 P 0.000127
AFFX-BioC-3_at 329.8 P 0.000052
AFFX-BioDn-5_at 374.1 P 0.000044
AFFX-BioDn-3_at 2170.8 P 0.00006
AFFX-CreX-5_at 4129.3 P 0.000044
AFFX-CreX-3_at 10186.9 P 0.000044
AFFX-DapX-5_at 242.9 P 0.000225
AFFX-DapX-M_at 730.3 P 0.000297
AFFX-DapX-3_at 1472.1 P 0.00007
AFFX-LysX-5_at 54.2 P 0.00034
AFFX-LysX-M_at 111.5 P 0.046467
AFFX-LysX-3_at 222.8 P 0.000052
AFFX-PheX-5_at 88.4 P 0.015183
AFFX-PheX-M_at 72.8 P 0.036569
AFFX-PheX-3_at 136.4 P 0.000081
AFFX-ThrX-5_at 101.1 P 0.002556
AFFX-ThrX-M_at 201 P 0.000169

Total number of rows: 22840

Table truncated, full table size 704 Kbytes.




Supplementary file Size Download File type/resource
GSM71139.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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