|
| Status |
Public on Apr 12, 2011 |
| Title |
Sum149-control1 (HuGene-1_0) |
| Sample type |
RNA |
| |
|
| Source name |
SUM149PT Vehicle CTRL
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: SUM149PT
er: ER(-)
p53: mut (M237I)
|
| Treatment protocol |
SUM149PT cells were plated at 1.5 x 10^6 cells per 150 x 25mm dish with 25mL of growth media, and allowed to adhere for 48h prior to treatment. The media in each plate was replaced with 25mL fresh media containing the drug treatment.
|
| Growth protocol |
SUM149PT cells were grown in Ham's F-12 media with 5% fetal bovine serume supplemented with 5 µg/mL insulin, 1 µg/mL hydrocortisone, 10 mM HEPES and Antimycotic/Antibiotic at 37°C with 5%CO2 and 85% humidity.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted using the RNeasy Mini kit (Qiagen Inc., Valencia, CA, USA). RNA quality and concentration was determined by analysis with an Agilent 2100 bioanalyzer at the Center for Functional Genomics at State University of New York at Albany (Rensselaer, NY, USA)
|
| Label |
biotin
|
| Label protocol |
Total RNA was biotin labeled using the NuGEN pico amplification protocol
|
| |
|
| Hybridization protocol |
Standard Affymetrix WT protocol for Gene 1.0 ST arrays
|
| Scan protocol |
Standard Affymetrix WT protocol for Gene 1.0 ST arrays
|
| Description |
mRNA expression after treatment with vehicle (ethanol and DMSO) for 48h
|
| Data processing |
Raw CEL files were processed using Affymetrix Expression Console Software using RMA
|
| |
|
| Submission date |
Apr 12, 2011 |
| Last update date |
Sep 01, 2016 |
| Contact name |
Sridar V Chittur |
| E-mail(s) |
schittur@albany.edu
|
| Phone |
518-591-7215
|
| Organization name |
SUNY-University at Albany
|
| Department |
Center for Functional Genomics
|
| Lab |
Microarray Core
|
| Street address |
One Discovery Drive, CRC 342G
|
| City |
Rensselaer |
| State/province |
NY |
| ZIP/Postal code |
12144 |
| Country |
USA |
| |
|
| Platform ID |
GPL6244 |
| Series (2) |
| GSE28542 |
Expression Profiling of Inflammatory Breast Cancer Cells Treated with the Novel Histone Deacetylase Inhibitor, CG-1521 (Affymetrix HuGene-1_0) |
| GSE28544 |
Expression Profiling of Inflammatory Breast Cancer Cells Treated with the Novel Histone Deacetylase Inhibitor, CG-1521 |
|
| Relations |
| Reanalyzed by |
GSE86357 |
