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GEO accession:
Sample GSM68899
Query DataSets for GSM68899
Status
Public on Nov 18, 2005
Title
8 h salt stressed replicate 2
Sample type
RNA
Source name
shoot tissue
Organism
Hordeum vulgare
Characteristics
cv. Morex
Extracted molecule
total RNA
Extraction protocol
Approximately 12 plants were used for RNA extraction
Label
biotin
Label protocol
Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
salt stressed
Data processing
GCOS 1.2
Submission date
Aug 09, 2005
Last update date
Aug 09, 2005
Contact name
HARKAMAL WALIA
E-mail(s)
waliah02@student.ucr.edu
Phone
951-827-3808
Organization name
University of California
Street address
Department of Botany & Plant Sciecnes
City
Riverside
State/province
CA
ZIP/Postal code
92521
Country
USA
Platform ID
GPL1340
Series (1)
GSE3097
Barley1 salinity stress study
Data table header descriptions
ID_REF
VALUE
GCOS12-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
263
P
0.00844
AFFX-BioB-M_at
216.1
P
0.000258
AFFX-BioB-3_at
136.8
P
0.001796
AFFX-BioC-5_at
514.5
P
0.000662
AFFX-BioC-3_at
328.6
P
0.000147
AFFX-BioDn-5_at
480.3
P
0.000446
AFFX-BioDn-3_at
3373.3
P
0.000147
AFFX-CreX-5_at
5272.4
P
0.000044
AFFX-CreX-3_at
10586.4
P
0.000044
AFFX-DapX-5_at
9.5
A
0.544587
AFFX-DapX-M_at
28.5
A
0.250796
AFFX-DapX-3_at
38.4
A
0.617401
AFFX-LysX-5_at
10.4
A
0.52976
AFFX-LysX-M_at
43.2
A
0.617401
AFFX-LysX-3_at
35.8
A
0.102165
AFFX-PheX-5_at
24.5
A
0.699394
AFFX-PheX-M_at
3.3
A
0.860518
AFFX-PheX-3_at
19.6
A
0.824672
AFFX-ThrX-5_at
6.4
A
0.963431
AFFX-ThrX-M_at
51.7
A
0.185131
Total number of rows:
22840
Table truncated, full table size
705 Kbytes
.
Supplementary data files not provided
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