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Sample GSM68899 Query DataSets for GSM68899
Status Public on Nov 18, 2005
Title 8 h salt stressed replicate 2
Sample type RNA
 
Source name shoot tissue
Organism Hordeum vulgare
Characteristics cv. Morex
Extracted molecule total RNA
Extraction protocol Approximately 12 plants were used for RNA extraction
Label biotin
Label protocol Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description salt stressed
Data processing GCOS 1.2
 
Submission date Aug 09, 2005
Last update date Aug 09, 2005
Contact name HARKAMAL WALIA
E-mail(s) waliah02@student.ucr.edu
Phone 951-827-3808
Organization name University of California
Street address Department of Botany & Plant Sciecnes
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
 
Platform ID GPL1340
Series (1)
GSE3097 Barley1 salinity stress study

Data table header descriptions
ID_REF
VALUE GCOS12-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 263 P 0.00844
AFFX-BioB-M_at 216.1 P 0.000258
AFFX-BioB-3_at 136.8 P 0.001796
AFFX-BioC-5_at 514.5 P 0.000662
AFFX-BioC-3_at 328.6 P 0.000147
AFFX-BioDn-5_at 480.3 P 0.000446
AFFX-BioDn-3_at 3373.3 P 0.000147
AFFX-CreX-5_at 5272.4 P 0.000044
AFFX-CreX-3_at 10586.4 P 0.000044
AFFX-DapX-5_at 9.5 A 0.544587
AFFX-DapX-M_at 28.5 A 0.250796
AFFX-DapX-3_at 38.4 A 0.617401
AFFX-LysX-5_at 10.4 A 0.52976
AFFX-LysX-M_at 43.2 A 0.617401
AFFX-LysX-3_at 35.8 A 0.102165
AFFX-PheX-5_at 24.5 A 0.699394
AFFX-PheX-M_at 3.3 A 0.860518
AFFX-PheX-3_at 19.6 A 0.824672
AFFX-ThrX-5_at 6.4 A 0.963431
AFFX-ThrX-M_at 51.7 A 0.185131

Total number of rows: 22840

Table truncated, full table size 705 Kbytes.




Supplementary data files not provided

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