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GEO accession:
Sample GSM68891
Query DataSets for GSM68891
Status
Public on Nov 18, 2005
Title
3 h control replicate 3
Sample type
RNA
Source name
shoot tissue
Organism
Hordeum vulgare
Characteristics
cv. Morex
Extracted molecule
total RNA
Extraction protocol
Approximately 12 plants were used for RNA extraction
Label
biotin
Label protocol
Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
control
Data processing
GCOS 1.2
Submission date
Aug 09, 2005
Last update date
Aug 09, 2005
Contact name
HARKAMAL WALIA
E-mail(s)
waliah02@student.ucr.edu
Phone
951-827-3808
Organization name
University of California
Street address
Department of Botany & Plant Sciecnes
City
Riverside
State/province
CA
ZIP/Postal code
92521
Country
USA
Platform ID
GPL1340
Series (1)
GSE3097
Barley1 salinity stress study
Data table header descriptions
ID_REF
VALUE
GCOS12-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
174.2
P
0.01667
AFFX-BioB-M_at
106.3
P
0.015183
AFFX-BioB-3_at
90
P
0.023929
AFFX-BioC-5_at
328.5
P
0.001102
AFFX-BioC-3_at
219.3
P
0.002275
AFFX-BioDn-5_at
248.2
P
0.000857
AFFX-BioDn-3_at
2022
P
0.000297
AFFX-CreX-5_at
2657.6
P
0.000044
AFFX-CreX-3_at
4247.7
P
0.000044
AFFX-DapX-5_at
20
A
0.250796
AFFX-DapX-M_at
16.3
A
0.216524
AFFX-DapX-3_at
2.8
A
0.963431
AFFX-LysX-5_at
2.9
A
0.455413
AFFX-LysX-M_at
47.1
A
0.470241
AFFX-LysX-3_at
12.1
A
0.313723
AFFX-PheX-5_at
3.9
A
0.712257
AFFX-PheX-M_at
3.6
A
0.804734
AFFX-PheX-3_at
14.7
A
0.672921
AFFX-ThrX-5_at
8.1
A
0.921998
AFFX-ThrX-M_at
19.3
A
0.313723
Total number of rows:
22840
Table truncated, full table size
705 Kbytes
.
Supplementary data files not provided
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