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Status
Public on Jun 22, 2012
Title
GTL16 R1 clone, copy number variation SNP6.0
Sample type
genomic
Source name
GTL16 R1 clone
Organism
Homo sapiens Characteristics
cell line: GTL16 R1 clone
Extracted molecule
genomic DNA
Extraction protocol
DNA were isolated using a DNeasy kit (Qiagen, Germantown, MD).
Label
biotin
Label protocol
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
Hybridization protocol
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
Scan protocol
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
Data processing
Affymetrix SNP6.0 data were processed using the aroma.affymetrix R package according to the methods of H. Bengtsson et al., (Bengtsson, Irizarry et al. 2008 [PMID 18204055]).
Submission date
Mar 04, 2011
Last update date
Jun 22, 2012
Contact name
Keith A Ching
E-mail(s)
keith.ching@pfizer.com Organization name
Pfizer, Inc.
Department
Computational Sciences
Street address
10777 Science Center Dr.
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL6801 Series (1)
GSE27692 Molecular profiles for GTL16 cell lines
Data table header descriptions ID_REF VALUE Normalized probeset summaries CES (chip effects set)
Data table ID_REF VALUE SNP_A-2131660
5599.216796875
SNP_A-1967418
1976.24487304688
SNP_A-1969580
6966.15625
SNP_A-4263484
4315.826171875
SNP_A-1978185
2937.66723632812
SNP_A-4264431
1675.75610351562
SNP_A-1980898
1394.76037597656
SNP_A-1983139
2087.466796875
SNP_A-4265735
1876.31518554688
SNP_A-1995832
1910.54528808594
SNP_A-1995893
4655.1298828125
SNP_A-1997689
5992.54150390625
SNP_A-1997709
2293.04736328125
SNP_A-1997896
1919.37268066406
SNP_A-1997922
1855.57336425781
SNP_A-2000230
4623.08740234375
SNP_A-2000332
8112.9892578125
SNP_A-2000337
3362.63720703125
SNP_A-2000342
4179.00537109375
SNP_A-4268172
2201.49560546875
1877772 52521 Kbytes .Supplementary file Size Download File type/resource GSM686016.CEL.gz
27.6 Mb
(ftp) (http) CEL
Processed data included within Sample table
