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Sample GSM68600 Query DataSets for GSM68600
Status Public on Jul 07, 2006
Title f2#270 versus pool Mouse muscle tissue
Sample type RNA
 
Channel 1
Source name f2#270
Organism Mus musculus
Characteristics Strain:C57BL/6J and C3H/HeJ on ApoE null Age:24 weeks Gender:Female
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name pool
Organism Mus musculus
Characteristics Strain:C57BL/6J and C3H/HeJ on ApoE null Age:24 weeks (150 randomly selected F2)
Extracted molecule total RNA
Label Cy5
 
 
Description Muscle tissue from 330 F2 female and male mice (animals fed a high fat "Western" diet from 8-24 weeks of age.) C57BL/J6 and C3H/HeJ on ApoE null backgrounds. All sample were compared to a common pool created from equal portions of RNA from each of the samples.
Data processing Arrays were quantified on the basis of spot intensity relative to background (Qhyb program, Rosetta), adjusted for experimental variation between arrays using average intensity over multiple channels, and fitted to an error model to determine significance (type I error). Gene expression is reported as the ratio of the mean log10 intensity (mlratio) relative to the pool derived from 150 mice randomly selected from the F2 population. Normalized values are the reported as the ratio of the mlratio relative to the pool.
 
Submission date Aug 09, 2005
Last update date Jul 07, 2006
Contact name Leslie Ingram-drake
E-mail(s) lingram@mednet.ucla.edu
Phone 310-794-9036
Fax 310-794-7345
URL http://www.mednet.ucla.edu
Organization name UCLA
Department Medicine/MIMG/Human Genetics
Street address 47-123 CHS
City Los Angeles
State/province CA
ZIP/Postal code 90095-1359
Country USA
 
Platform ID GPL2510
Series (1)
GSE3088 Expression profiling of Muscle tissue from (C57BL/6J X C3H/HeJ)F2 mice on ApoE null backgrounds

Data table header descriptions
ID_REF Rosetta generated unique probe identifier
VALUE MLRATIO: Averaged log10 ratio [log10(CHANNEL1/CHANNEL2 ), error weighted]
PVALUE P-value of LogRatio

Data table
ID_REF VALUE PVALUE
10024393144 0.0688700825 0.178514421
10024393145 -0.118664876 0.0475915857
10024393146 0.1782336682 0.0007675008
10024393147 -0.043579362 0.5363768935
10024393148 -0.110114194 0.0266165417
10024393149 0.1717064083 0.0033694329
10024393150 -0.37556237 5.2758251E-9
10024393151 -0.064871281 0.3998661637
10024393152 -0.016869541 0.92573452
10024393153 0.0344620682 0.5300800204
10024393154 -0.069035143 0.2209944278
10024393155 -0.010048246 0.8878154159
10024393156 0.0452938862 0.3619104028
10024393157 -0.008493137 0.8672151566
10024393158 -0.076924071 0.1738643944
10024393159 0.0412124358 0.3610085249
10024393160 0.0009231482 0.9888124466
10024393161 -0.006206402 0.9289745688
10024393162 0.2587132454 0.0000345685
10024393163 -0.007940209 0.969191134

Total number of rows: 23382

Table truncated, full table size 859 Kbytes.




Supplementary data files not provided

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