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Sample GSM68451 Query DataSets for GSM68451
Status Public on Jul 07, 2006
Title f2#93 versus pool Mouse muscle tissue
Sample type RNA
 
Channel 1
Source name f2#93
Organism Mus musculus
Characteristics Strain:C57BL/6J and C3H/HeJ on ApoE null Age:24 weeks Gender:male
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name pool
Organism Mus musculus
Characteristics Strain:C57BL/6J and C3H/HeJ on ApoE null Age:24 weeks (150 randomly selected F2)
Extracted molecule total RNA
Label Cy5
 
 
Description Muscle tissue from 330 F2 female and male mice (animals fed a high fat "Western" diet from 8-24 weeks of age.) C57BL/J6 and C3H/HeJ on ApoE null backgrounds. All sample were compared to a common pool created from equal portions of RNA from each of the samples.
Data processing Arrays were quantified on the basis of spot intensity relative to background (Qhyb program, Rosetta), adjusted for experimental variation between arrays using average intensity over multiple channels, and fitted to an error model to determine significance (type I error). Gene expression is reported as the ratio of the mean log10 intensity (mlratio) relative to the pool derived from 150 mice randomly selected from the F2 population. Normalized values are the reported as the ratio of the mlratio relative to the pool.
 
Submission date Aug 09, 2005
Last update date Jul 07, 2006
Contact name Leslie Ingram-drake
E-mail(s) lingram@mednet.ucla.edu
Phone 310-794-9036
Fax 310-794-7345
URL http://www.mednet.ucla.edu
Organization name UCLA
Department Medicine/MIMG/Human Genetics
Street address 47-123 CHS
City Los Angeles
State/province CA
ZIP/Postal code 90095-1359
Country USA
 
Platform ID GPL2510
Series (1)
GSE3088 Expression profiling of Muscle tissue from (C57BL/6J X C3H/HeJ)F2 mice on ApoE null backgrounds

Data table header descriptions
ID_REF Rosetta generated unique probe identifier
VALUE MLRATIO: Averaged log10 ratio [log10(CHANNEL1/CHANNEL2 ), error weighted]
PVALUE P-value of LogRatio

Data table
ID_REF VALUE PVALUE
10024393144 -0.004763005 0.9360121489
10024393145 -0.089700319 0.3040770888
10024393146 -0.053029999 0.6668768525
10024393147 0.0070255133 0.9315578938
10024393148 -0.072154157 0.148630023
10024393149 0.0824252591 0.1077922806
10024393150 -0.078601405 0.166125387
10024393151 -0.063230209 0.7331963181
10024393152 0.0020764573 0.9955646396
10024393153 -0.0400833 0.425247103
10024393154 -0.016995711 0.7775057554
10024393155 -0.041372884 0.7195324898
10024393156 -0.020385657 0.7243767977
10024393157 -0.13701725 0.0043162638
10024393158 0.0228799991 0.8523133397
10024393159 -0.023962256 0.6801228523
10024393160 -0.007592565 0.9347164631
10024393161 -0.00258724 0.9629748464
10024393162 -0.064397193 0.2070633918
10024393163 -0.403909057 0.4555135667

Total number of rows: 23382

Table truncated, full table size 858 Kbytes.




Supplementary data files not provided

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