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Sample GSM68402 Query DataSets for GSM68402
Status Public on Jul 07, 2006
Title f2#40 versus pool Mouse muscle tissue
Sample type RNA
 
Channel 1
Source name f2#40
Organism Mus musculus
Characteristics Strain:C57BL/6J and C3H/HeJ on ApoE null Age:24 weeks Gender:male
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name pool
Organism Mus musculus
Characteristics Strain:C57BL/6J and C3H/HeJ on ApoE null Age:24 weeks (150 randomly selected F2)
Extracted molecule total RNA
Label Cy5
 
 
Description Muscle tissue from 330 F2 female and male mice (animals fed a high fat "Western" diet from 8-24 weeks of age.) C57BL/J6 and C3H/HeJ on ApoE null backgrounds. All sample were compared to a common pool created from equal portions of RNA from each of the samples.
Data processing Arrays were quantified on the basis of spot intensity relative to background (Qhyb program, Rosetta), adjusted for experimental variation between arrays using average intensity over multiple channels, and fitted to an error model to determine significance (type I error). Gene expression is reported as the ratio of the mean log10 intensity (mlratio) relative to the pool derived from 150 mice randomly selected from the F2 population. Normalized values are the reported as the ratio of the mlratio relative to the pool.
 
Submission date Aug 09, 2005
Last update date Jul 07, 2006
Contact name Leslie Ingram-drake
E-mail(s) lingram@mednet.ucla.edu
Phone 310-794-9036
Fax 310-794-7345
URL http://www.mednet.ucla.edu
Organization name UCLA
Department Medicine/MIMG/Human Genetics
Street address 47-123 CHS
City Los Angeles
State/province CA
ZIP/Postal code 90095-1359
Country USA
 
Platform ID GPL2510
Series (1)
GSE3088 Expression profiling of Muscle tissue from (C57BL/6J X C3H/HeJ)F2 mice on ApoE null backgrounds

Data table header descriptions
ID_REF Rosetta generated unique probe identifier
VALUE MLRATIO: Averaged log10 ratio [log10(CHANNEL1/CHANNEL2 ), error weighted]
PVALUE P-value of LogRatio

Data table
ID_REF VALUE PVALUE
10024393144 0.0040739938 0.9385755062
10024393145 -0.034686908 0.6399278641
10024393146 -0.05954 0.6291757822
10024393147 -0.005289215 0.935732007
10024393148 0.0122975372 0.8530368209
10024393149 0.0665162727 0.2382303178
10024393150 -0.114660829 0.0391940698
10024393151 -0.037310876 0.8441745639
10024393152 -0.070193268 0.7112622857
10024393153 0.0003800001 0.9946730733
10024393154 -0.005751535 0.9286878705
10024393155 -0.026302993 0.8323741555
10024393156 0.0029236767 0.9630685449
10024393157 -0.026054839 0.6007881761
10024393158 -0.043820001 0.7220788598
10024393159 -0.03920944 0.5061142445
10024393160 -0.030771626 0.7339391112
10024393161 -0.009800153 0.903380692
10024393162 -0.088040337 0.0526286513
10024393163 -0.078424446 0.8374446034

Total number of rows: 23382

Table truncated, full table size 857 Kbytes.




Supplementary data files not provided

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