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Sample GSM683906 Query DataSets for GSM683906
Status Public on Mar 01, 2011
Title Myers_GM12878_1_None_HudsonAlpha
Sample type SRA
 
Source name GM12878
Organism Homo sapiens
Characteristics cell: GM12878
cell organism: Human
cell description: lymphoblastoid
cell karyotype: relatively normal
cell lineage: International HapMap Project - CEPH/Utah - European Caucasion; Epstein-Barr Virus
cell sex: F
replicate: 1
treatment: None
obtainedby: HudsonAlpha
Biomaterial provider Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs
 
Library strategy Bisulfite-Seq
Library source genomic
Library selection Reduced Representation
Instrument model Illumina Genome Analyzer IIx
 
Description Reduced Representation
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs
 
Submission date Mar 01, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10999
Series (1)
GSE27584 DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha
Relations
SRA SRX066401
BioSample SAMN00621882

Supplementary file Size Download File type/resource
GSM683906_hg19_wgEncodeHaibMethylRrbsGm12878HaibSitesRep1.bedRrbs.gz 14.8 Mb (ftp)(http) BEDRRBS
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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