GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM683830
Query DataSets for GSM683830
Status
Public on Mar 01, 2011
Title
Myers_AG04449_1_None_UW
Sample type
SRA
Source name
AG04449
Organism
Homo sapiens
Characteristics
cell: AG04449
cell organism: Human
cell description: Fetal buttock/thigh fibroblast
cell sex: M
replicate: 1
treatment: None
obtainedby: UW
Biomaterial provider
Coriell Cell Repositories
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=AG04449
Growth protocol
Cells were grown according to ENCODE cell culture protocols:
http://genome.ucsc.edu/ENCODE/protocols/cells/human/UW_Stam:AG04449_Stam_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
For extraction protocol details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs
Library strategy
Bisulfite-Seq
Library source
genomic
Library selection
Reduced Representation
Instrument model
Illumina Genome Analyzer IIx
Description
Reduced Representation
Data processing
For data processing details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs
Submission date
Mar 01, 2011
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL10999
Series (1)
GSE27584
DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha
Relations
SRA
SRX066328
BioSample
SAMN00621809
Supplementary file
Size
Download
File type/resource
GSM683830_hg19_wgEncodeHaibMethylRrbsAg04449UwSitesRep1.bedRrbs.gz
14.1 Mb
(ftp)
(http)
BEDRRBS
SRA Run Selector
Processed data provided as supplementary file
Raw data are available in SRA
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|