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GEO accession:
Sample GSM683828
Query DataSets for GSM683828
Status
Public on Mar 01, 2011
Title
Myers_HeLa-S3_2_None_HudsonAlpha
Sample type
SRA
Source name
HeLa-S3
Organism
Homo sapiens
Characteristics
cell: HeLa-S3
cell organism: Human
cell description: cervical carcinoma
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
replicate: 2
treatment: None
obtainedby: HudsonAlpha
Biomaterial provider
ATCC
Growth protocol
Cells were grown according to ENCODE cell culture protocols:
http://genome.ucsc.edu/ENCODE/protocols/cells/human/HeLa-S3:HeLa-S3_protocol.pdf
HeLa-S3_IFN_Crawford:HeLa-S3_IFN_Crawford_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
For extraction protocol details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs
Library strategy
Bisulfite-Seq
Library source
genomic
Library selection
Reduced Representation
Instrument model
Illumina Genome Analyzer IIx
Description
Reduced Representation
Data processing
For data processing details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs
Submission date
Mar 01, 2011
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL10999
Series (1)
GSE27584
DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha
Relations
SRA
SRX066326
BioSample
SAMN00621808
Supplementary file
Size
Download
File type/resource
GSM683828_hg19_wgEncodeHaibMethylRrbsHelas3HaibSitesRep2.bedRrbs.gz
14.5 Mb
(ftp)
(http)
BEDRRBS
SRA Run Selector
Processed data provided as supplementary file
Raw data are available in SRA
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