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GEO accession:
Sample GSM6782819
Query DataSets for GSM6782819
Status
Public on Dec 04, 2022
Title
microRNA-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB983NUU)
Sample type
SRA
Source name
Homo sapiens male adult (30 years) CD8-positive naive resting alpha-beta T primary cell
Organism
Homo sapiens
Characteristics
cell_type: naive thymus-derived CD8-positive, alpha-beta T cell
biomaterial_type: primary cell
description: naïve CD8+ T cell(CD45RO-CCR7+)
biosample encode accession: ENCBS048QUB (SAMN22785994)
Sex: male
dev stage: adult
age: 30 year
donor_id: ENCDO166AGR
lab: Barbara Wold, Caltech
source: AllCells
link: ENCBS048QUB at ENCODE;
https://www.encodeproject.org/ENCBS048QUB/
link: Derived from ENCODE donor ENCDO166AGR;
https://www.encodeproject.org/ENCDO166AGR/
Extracted molecule
total RNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/49f43842-5ab4-4aa1-a6f4-2b1234955d93/@@download/attachment/Multiplexed%20miRNA%20Sequencing%20Library%20Generation%20Protocol-3.4.pdf
Library strategy
miRNA-Seq
Library source
transcriptomic
Library selection
size fractionation
Instrument model
NextSeq 2000
Description
https://www.encodeproject.org/experiments/ENCSR641JYN/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation human naive CD8+ T cell microRNA-seq from Mortazavi
experiment encode accession: ENCSR641JYN
assay title: microRNA-seq
assembly: GRCh38
encode release date: 2022-02-12
lab: Ali Mortazavi, UCI
library encode accession: ENCLB983NUU
size range: <30
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Dec 02, 2022
Last update date
Jan 20, 2023
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL30173
Series (1)
GSE219562
microRNA-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCSR641JYN)
Relations
BioSample
SAMN22785994
SRA
SRX18485679
Named Annotation
GSM6782819_ENCFF608EBF_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation
GSM6782819_ENCFF523XPK_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation
GSM6782819_ENCFF537EKM_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation
GSM6782819_ENCFF814ZHT_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Supplementary file
Size
Download
File type/resource
GSM6782819_ENCFF087HBE_microRNA_quantifications_GRCh38.tsv.gz
8.6 Kb
(ftp)
(http)
TSV
GSM6782819_ENCFF523XPK_plus_strand_signal_of_all_reads_GRCh38.bigWig
33.2 Mb
(ftp)
(http)
BIGWIG
GSM6782819_ENCFF537EKM_minus_strand_signal_of_all_reads_GRCh38.bigWig
32.8 Mb
(ftp)
(http)
BIGWIG
GSM6782819_ENCFF608EBF_plus_strand_signal_of_unique_reads_GRCh38.bigWig
10.7 Mb
(ftp)
(http)
BIGWIG
GSM6782819_ENCFF814ZHT_minus_strand_signal_of_unique_reads_GRCh38.bigWig
10.6 Mb
(ftp)
(http)
BIGWIG
GSM6782819_ENCLB983NUU_README.txt.gz
664 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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