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Sample GSM67769 Query DataSets for GSM67769
Status Public on Aug 08, 2006
Title Minus_LPS4h_Mu11KsubB_rep1
Sample type RNA
 
Source name MRP14(S100A9)-negative-mouse bone-marrow granulocytes (without erythrocytes)
Organism Mus musculus
Characteristics stimulated for 4h with LPS
Extracted molecule total RNA
Extraction protocol lysis in RLT buffer (Qiagen); total-RNA extracted with RNeasy kit (Qiagen)
Label biotin
Label protocol during in-vitro transcription; standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description original experiment name: V17ML4-130701B_TGT1000
Data processing Affymetrix Microarray Suite version 5.0, statistical algorithm, scaling target value 1000
 
Submission date Aug 08, 2005
Last update date Aug 08, 2005
Contact name Martin Eisenacher
E-mail(s) martin.eisenacher@ruhr-uni-bochum.de, eisenach@uni-muenster.de
URL http://ifg-izkf.uni-muenster.de/
Organization name Westfaelische Wilhelms-Universitaet Muenster
Department Integrierte Funktionelle Genomik (IFG)
Lab Bioinformatik
Street address von-Esmarch-Str. 56
City Muenster
State/province NRW
ZIP/Postal code D-48149
Country Germany
 
Platform ID GPL76
Series (1)
GSE3079 Expression profile of MRP14(S100A9)-positive and -negative mouse bone marrow granulocytes under different stimulations

Data table header descriptions
ID_REF Affymetrix probe set identifier
VALUE MAS5 statistical algorithm-calculated Signal intensity, scaling target value 1000
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the reliability of the measurement (correlated with Absence or Presence of transcript)

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
IL2_at 115 A 0.740172
IL10_at 621.6 A 0.195266
GMCSF_at 265.5 A 0.672921
TNFRII_at 1139.2 P 0.01667
MIP1-B_at 7201.2 P 0.000258
IL4_at 256.2 A 0.51489
IL12_P40_at 97.7 A 0.916408
TNFa_at 2522 P 0.000972
TCRa_at 93.5 A 0.981719
AFFX-BioB-5_at 1847.1 P 0.039661
AFFX-BioB-M_at 4292.6 P 0.000044
AFFX-BioB-3_at 2668.8 P 0.002867
AFFX-BioC-5_at 7521.5 P 0.00011
AFFX-BioC-3_at 5188.7 P 0.000195
AFFX-BioDn-5_at 5351.5 P 0.000147
AFFX-BioDn-3_at 34648.3 P 0.000117
AFFX-CreX-5_at 78391.3 P 0.000098
AFFX-CreX-3_at 103664.6 P 0.000219
AFFX-BioB-5_st 696.6 A 0.275146
AFFX-BioB-M_st 788.3 A 0.440646

Total number of rows: 6595

Table truncated, full table size 204 Kbytes.




Supplementary data files not provided

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