NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM67281 Query DataSets for GSM67281
Status Public on Dec 05, 2005
Title day 1 slide 8
Sample type RNA
 
Channel 1
Source name jejunum slow salmonella d1
Organism Gallus gallus
Characteristics tissue: jejunum
infection: salmonella
Extracted molecule total RNA
Label cy3
 
Channel 2
Source name jejunum fast salmonella
Organism Gallus gallus
Characteristics tissue: jejunum
infection: salmonella
Extracted molecule total RNA
Label cy5
 
 
Description comparison 2 chicken lines
Data processing genepix pro
 
Submission date Aug 05, 2005
Last update date Aug 16, 2005
Contact name Saskia van Hemert
E-mail(s) saskia.vanhemert@wur.nl
Organization name Animal Sciences Group
Street address PO box 65
City Lelystad
ZIP/Postal code 8200 AB
Country Netherlands
 
Platform ID GPL2719
Series (2)
GSE3066 Gene expression responses to a Salmonella infection in the chicken intestine differ between lines.
GSE3702 Early gene expression responses to a Salmonella infection in the chicken intestine

Data table header descriptions
ID_REF
Dia.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
VALUE
F532 Median - B532
F635 Median - B635
F532 Mean - B532
F635 Mean - B635
F532 Total Intensity
F635 Total Intensity
SNR 532
SNR 635
Flags
Normalize
Autoflag

Data table
ID_REF Dia. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. F635 Median F635 Mean F635 SD F635 CV B635 B635 Median B635 Mean B635 SD B635 CV % > B635+1SD % > B635+2SD F635 % Sat. Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) F Pixels B Pixels Circularity Sum of Medians (635/532) Sum of Means (635/532) VALUE F532 Median - B532 F635 Median - B635 F532 Mean - B532 F635 Mean - B635 F532 Total Intensity F635 Total Intensity SNR 532 SNR 635 Flags Normalize Autoflag
19_28S 100 50 56 27 48 60 60 74 54 72 1 1 0 639 663 159 24 641 641 672 180 26 6 2 0 0.178 -5.787 5.485 4.898 14.285 14.045 0.029 80 1163 100 -11 19 -2.493 -10 -1 -3 22 4537 53094 -0.33 -0.051 -50 1 0
20_28S 100 60 69 44 63 57 57 65 34 52 17 3 0 624 632 112 17 630 630 650 152 23 11 1 0 -1.447 0.147 4.456 4.188 7.591 0.207 0.002 80 1069 100 -2 13 null 3 -5 12 1 5559 50593 0.109 -0.12 -50 1 0
21_28S 100 69 74 29 40 63 63 91 144 158 0 0 0 659 670 119 17 646 646 677 187 27 11 0 0 2.363 2.31 5.401 5.062 13.391 20.814 0.007 80 929 100 17 33 1.241 5 12 10 23 5919 53678 -0.12 -0.039 -50 1 0
22_28S 140 102 121 74 61 56 56 60 23 38 69 49 0 1778 2010 823 40 626 626 646 146 22 100 98 0 24.611 21.007 25.628 27.063 11.228 25.27 0.309 156 1474 100 1197 1448 4.621 46 1151 65 1383 19024 313592 2.605 9.275 0 1 0
23_28S 150 116 127 65 51 56 56 62 27 43 75 51 0 3248 3259 1067 32 672 672 685 150 21 100 100 0 43.025 36.561 43.335 44.961 9.293 44.549 0.296 156 1750 100 2634 2656 5.427 59 2575 70 2586 19833 508596 2.38 17.085 0 1 0
24_28S 100 88 100 77 77 85 85 108 79 73 10 2 0 867 1181 793 67 819 819 1104 942 85 15 7 0 17.554 24.63 5.645 6.823 16.499 31.064 0.18 80 1044 100 49 375 4.134 2 47 14 361 7990 94446 -0.103 0.082 -50 1 0
31_CD8 alpha 100 144 147 45 30 134 134 140 42 30 21 3 0 644 657 121 18 619 619 630 108 17 25 6 0 2.626 3.082 2.949 3.023 18.032 0.123 0.001 80 1021 100 34 50 1.393 9 25 12 38 11789 52669 0.167 0.254 -50 1 0
32_CD8 alpha 100 151 157 44 27 160 160 165 52 31 11 2 0 767 775 117 15 762 762 791 363 45 1 0 0 -0.596 -4.726 3.051 2.228 20.415 83.796 0 80 861 100 -4 10 null -9 5 -2 12 12647 62025 -0.144 -0.045 -50 1 0
33_CD8 alpha 100 87 94 39 41 82 82 89 39 43 20 6 0 777 782 135 17 793 793 804 176 21 7 2 0 -3.376 -0.881 3.724 3.578 14.55 54.375 0.003 80 924 100 -12 1 null 4 -16 12 -11 7574 62626 0.125 -0.125 -50 1 0
34_CD8 alpha 100 142 150 40 26 146 146 151 39 26 15 5 0 240 246 56 23 235 235 240 56 23 17 7 0 -1.266 2.893 1.601 1.548 11.788 772.567 0 80 1136 100 1 14 null -4 5 3 11 12044 19694 -0.014 0.097 -50 1 0
35_CD8 alpha 100 177 181 52 29 173 173 176 45 25 22 5 0 235 240 49 20 225 225 231 53 23 25 5 0 1.875 1.688 0.931 1.085 13.082 0.017 0 80 1136 100 13 22 0.907 4 9 8 14 14563 19271 0.12 0.172 -50 1 0
36_CD8 alpha 100 119 127 40 32 120 120 127 53 42 10 3 0 225 233 53 22 214 214 224 56 25 17 5 0 -10.127 2.813 1.305 1.539 13.804 169.307 0.002 80 1249 100 10 24 null -1 11 6 18 10176 18666 -0.01 0.161 -50 1 0
25_CD8 beta 100 53 60 24 40 57 57 63 26 41 16 7 0 665 692 112 16 624 624 648 167 25 25 0 0 -12.377 20.817 5.327 5.154 15.373 58.83 0.002 80 1040 100 37 70 null -3 40 3 67 4827 55343 -0.104 0.264 -50 1 0
26_CD8 beta 100 145 151 47 31 141 141 147 49 33 20 6 0 756 767 187 24 703 703 712 124 17 26 6 0 12.237 6.218 2.986 2.656 11.571 0.503 0.002 80 911 100 57 74 3.613 4 53 10 64 12137 61395 0.088 0.441 -50 1 0
27_CD8 beta 40 78 98 62 63 60 60 68 24 36 33 25 0 850 892 224 25 696 696 718 150 20 58 33 0 8.593 5.235 2.628 4.267 12.904 80.755 0.003 12 160 100 171 233 3.103 17 154 37 196 1179 10724 1.244 1.159 0 1 0
28_CD8 beta 100 56 63 25 40 59 59 63 29 46 16 2 0 622 648 123 18 641 641 657 137 20 11 3 0 5.626 1.688 2.608 2.76 24.29 0.138 0.004 80 1034 100 -21 11 2.492 -3 -18 4 7 5102 51828 0 -0.067 -50 1 0
29_CD8 beta 100 141 149 45 30 148 148 154 48 31 13 3 0 791 791 146 18 734 734 747 137 18 21 7 0 -8.72 34.882 2.91 2.374 11.701 371.934 0 80 1019 100 50 57 null -6 56 1 56 11953 63361 -0.1 0.32 -50 1 0
30_CD8 beta 100 74 80 32 40 66 66 75 48 64 12 3 0 690 733 213 29 698 698 733 327 44 3 1 0 -0.964 2.566 7.655 6.762 15.162 20.363 0.015 80 1137 100 0 47 null 7 -7 13 34 6431 58681 0.101 0 -50 1 0
1_EC 1 170 261 352 236 66 68 68 74 31 41 100 97 0 21446 24270 11799 48 771 771 826 253 30 100 100 0 107.004 82.711 106.978 93.679 6.38 83.656 0.665 208 4168 100 20868 23783 6.742 193 20675 284 23499 73351 5048257 8.965 92.464 -75 1 0
2_EC 1 180 250 311 175 56 63 63 69 29 42 99 96 0 23526 24709 11586 46 808 808 858 237 27 100 100 0 121.338 96.303 110.711 104.243 6.637 106.263 0.64 256 3990 100 22905 24149 6.923 187 22718 248 23901 79837 6325703 8.241 100.636 -75 1 0

Total number of rows: 14532

Table truncated, full table size 3158 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap