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GEO accession:
Sample GSM67281
Query DataSets for GSM67281
Status
Public on Dec 05, 2005
Title
day 1 slide 8
Sample type
RNA
Channel 1
Source name
jejunum slow salmonella d1
Organism
Gallus gallus
Characteristics
tissue: jejunum
infection: salmonella
Extracted molecule
total RNA
Label
cy3
Channel 2
Source name
jejunum fast salmonella
Organism
Gallus gallus
Characteristics
tissue: jejunum
infection: salmonella
Extracted molecule
total RNA
Label
cy5
Description
comparison 2 chicken lines
Data processing
genepix pro
Submission date
Aug 05, 2005
Last update date
Aug 16, 2005
Contact name
Saskia van Hemert
E-mail(s)
saskia.vanhemert@wur.nl
Organization name
Animal Sciences Group
Street address
PO box 65
City
Lelystad
ZIP/Postal code
8200 AB
Country
Netherlands
Platform ID
GPL2719
Series (2)
GSE3066
Gene expression responses to a Salmonella infection in the chicken intestine differ between lines.
GSE3702
Early gene expression responses to a Salmonella infection in the chicken intestine
Data table header descriptions
ID_REF
Dia.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
VALUE
F532 Median - B532
F635 Median - B635
F532 Mean - B532
F635 Mean - B635
F532 Total Intensity
F635 Total Intensity
SNR 532
SNR 635
Flags
Normalize
Autoflag
Data table
ID_REF
Dia.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
VALUE
F532 Median - B532
F635 Median - B635
F532 Mean - B532
F635 Mean - B635
F532 Total Intensity
F635 Total Intensity
SNR 532
SNR 635
Flags
Normalize
Autoflag
19_28S
100
50
56
27
48
60
60
74
54
72
1
1
0
639
663
159
24
641
641
672
180
26
6
2
0
0.178
-5.787
5.485
4.898
14.285
14.045
0.029
80
1163
100
-11
19
-2.493
-10
-1
-3
22
4537
53094
-0.33
-0.051
-50
1
0
20_28S
100
60
69
44
63
57
57
65
34
52
17
3
0
624
632
112
17
630
630
650
152
23
11
1
0
-1.447
0.147
4.456
4.188
7.591
0.207
0.002
80
1069
100
-2
13
null
3
-5
12
1
5559
50593
0.109
-0.12
-50
1
0
21_28S
100
69
74
29
40
63
63
91
144
158
0
0
0
659
670
119
17
646
646
677
187
27
11
0
0
2.363
2.31
5.401
5.062
13.391
20.814
0.007
80
929
100
17
33
1.241
5
12
10
23
5919
53678
-0.12
-0.039
-50
1
0
22_28S
140
102
121
74
61
56
56
60
23
38
69
49
0
1778
2010
823
40
626
626
646
146
22
100
98
0
24.611
21.007
25.628
27.063
11.228
25.27
0.309
156
1474
100
1197
1448
4.621
46
1151
65
1383
19024
313592
2.605
9.275
0
1
0
23_28S
150
116
127
65
51
56
56
62
27
43
75
51
0
3248
3259
1067
32
672
672
685
150
21
100
100
0
43.025
36.561
43.335
44.961
9.293
44.549
0.296
156
1750
100
2634
2656
5.427
59
2575
70
2586
19833
508596
2.38
17.085
0
1
0
24_28S
100
88
100
77
77
85
85
108
79
73
10
2
0
867
1181
793
67
819
819
1104
942
85
15
7
0
17.554
24.63
5.645
6.823
16.499
31.064
0.18
80
1044
100
49
375
4.134
2
47
14
361
7990
94446
-0.103
0.082
-50
1
0
31_CD8 alpha
100
144
147
45
30
134
134
140
42
30
21
3
0
644
657
121
18
619
619
630
108
17
25
6
0
2.626
3.082
2.949
3.023
18.032
0.123
0.001
80
1021
100
34
50
1.393
9
25
12
38
11789
52669
0.167
0.254
-50
1
0
32_CD8 alpha
100
151
157
44
27
160
160
165
52
31
11
2
0
767
775
117
15
762
762
791
363
45
1
0
0
-0.596
-4.726
3.051
2.228
20.415
83.796
0
80
861
100
-4
10
null
-9
5
-2
12
12647
62025
-0.144
-0.045
-50
1
0
33_CD8 alpha
100
87
94
39
41
82
82
89
39
43
20
6
0
777
782
135
17
793
793
804
176
21
7
2
0
-3.376
-0.881
3.724
3.578
14.55
54.375
0.003
80
924
100
-12
1
null
4
-16
12
-11
7574
62626
0.125
-0.125
-50
1
0
34_CD8 alpha
100
142
150
40
26
146
146
151
39
26
15
5
0
240
246
56
23
235
235
240
56
23
17
7
0
-1.266
2.893
1.601
1.548
11.788
772.567
0
80
1136
100
1
14
null
-4
5
3
11
12044
19694
-0.014
0.097
-50
1
0
35_CD8 alpha
100
177
181
52
29
173
173
176
45
25
22
5
0
235
240
49
20
225
225
231
53
23
25
5
0
1.875
1.688
0.931
1.085
13.082
0.017
0
80
1136
100
13
22
0.907
4
9
8
14
14563
19271
0.12
0.172
-50
1
0
36_CD8 alpha
100
119
127
40
32
120
120
127
53
42
10
3
0
225
233
53
22
214
214
224
56
25
17
5
0
-10.127
2.813
1.305
1.539
13.804
169.307
0.002
80
1249
100
10
24
null
-1
11
6
18
10176
18666
-0.01
0.161
-50
1
0
25_CD8 beta
100
53
60
24
40
57
57
63
26
41
16
7
0
665
692
112
16
624
624
648
167
25
25
0
0
-12.377
20.817
5.327
5.154
15.373
58.83
0.002
80
1040
100
37
70
null
-3
40
3
67
4827
55343
-0.104
0.264
-50
1
0
26_CD8 beta
100
145
151
47
31
141
141
147
49
33
20
6
0
756
767
187
24
703
703
712
124
17
26
6
0
12.237
6.218
2.986
2.656
11.571
0.503
0.002
80
911
100
57
74
3.613
4
53
10
64
12137
61395
0.088
0.441
-50
1
0
27_CD8 beta
40
78
98
62
63
60
60
68
24
36
33
25
0
850
892
224
25
696
696
718
150
20
58
33
0
8.593
5.235
2.628
4.267
12.904
80.755
0.003
12
160
100
171
233
3.103
17
154
37
196
1179
10724
1.244
1.159
0
1
0
28_CD8 beta
100
56
63
25
40
59
59
63
29
46
16
2
0
622
648
123
18
641
641
657
137
20
11
3
0
5.626
1.688
2.608
2.76
24.29
0.138
0.004
80
1034
100
-21
11
2.492
-3
-18
4
7
5102
51828
0
-0.067
-50
1
0
29_CD8 beta
100
141
149
45
30
148
148
154
48
31
13
3
0
791
791
146
18
734
734
747
137
18
21
7
0
-8.72
34.882
2.91
2.374
11.701
371.934
0
80
1019
100
50
57
null
-6
56
1
56
11953
63361
-0.1
0.32
-50
1
0
30_CD8 beta
100
74
80
32
40
66
66
75
48
64
12
3
0
690
733
213
29
698
698
733
327
44
3
1
0
-0.964
2.566
7.655
6.762
15.162
20.363
0.015
80
1137
100
0
47
null
7
-7
13
34
6431
58681
0.101
0
-50
1
0
1_EC 1
170
261
352
236
66
68
68
74
31
41
100
97
0
21446
24270
11799
48
771
771
826
253
30
100
100
0
107.004
82.711
106.978
93.679
6.38
83.656
0.665
208
4168
100
20868
23783
6.742
193
20675
284
23499
73351
5048257
8.965
92.464
-75
1
0
2_EC 1
180
250
311
175
56
63
63
69
29
42
99
96
0
23526
24709
11586
46
808
808
858
237
27
100
100
0
121.338
96.303
110.711
104.243
6.637
106.263
0.64
256
3990
100
22905
24149
6.923
187
22718
248
23901
79837
6325703
8.241
100.636
-75
1
0
Total number of rows:
14532
Table truncated, full table size
3158 Kbytes
.
Supplementary data files not provided
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