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GEO accession:
Sample GSM67278
Query DataSets for GSM67278
Status
Public on Dec 05, 2005
Title
day 1 slide 5
Sample type
RNA
Channel 1
Source name
jejunum fast control d1
Organism
Gallus gallus
Characteristics
tissue: jejunum
infection: control
Extracted molecule
total RNA
Label
cy3
Channel 2
Source name
jejunum slow control d1
Organism
Gallus gallus
Characteristics
tissue: jejunum
infection: control
Extracted molecule
total RNA
Label
cy5
Description
comparison 2 chicken lines
Data processing
genepix pro
Submission date
Aug 05, 2005
Last update date
Aug 16, 2005
Contact name
Saskia van Hemert
E-mail(s)
saskia.vanhemert@wur.nl
Organization name
Animal Sciences Group
Street address
PO box 65
City
Lelystad
ZIP/Postal code
8200 AB
Country
Netherlands
Platform ID
GPL2719
Series (2)
GSE3066
Gene expression responses to a Salmonella infection in the chicken intestine differ between lines.
GSE3702
Early gene expression responses to a Salmonella infection in the chicken intestine
Data table header descriptions
ID_REF
Dia.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
VALUE
F532 Median - B532
F635 Median - B635
F532 Mean - B532
F635 Mean - B635
F532 Total Intensity
F635 Total Intensity
SNR 532
SNR 635
Flags
Normalize
Autoflag
Data table
ID_REF
Dia.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
VALUE
F532 Median - B532
F635 Median - B635
F532 Mean - B532
F635 Mean - B635
F532 Total Intensity
F635 Total Intensity
SNR 532
SNR 635
Flags
Normalize
Autoflag
19_28S
100
171
187
87
46
147
147
169
107
63
21
2
0
265
272
48
17
263
263
271
60
22
18
0
0
0.146
0.226
0.731
0.703
3.757
0.142
0.025
80
1060
100
25
47
-2.776
23
2
39
8
14986
21789
0.169
0.018
-50
1
0
20_28S
100
242
282
195
69
147
147
176
136
77
36
16
0
320
338
65
19
317
317
327
90
27
11
3
0
0.047
0.156
0.574
0.371
7.774
0.009
0
80
1072
100
97
155
-4.411
94
3
135
20
22666
27074
0.775
0.122
-50
1
0
21_28S
100
243
268
158
59
193
193
220
126
57
31
11
0
306
314
71
22
295
295
306
77
25
11
6
0
0.213
0.234
0.295
0.262
3.89
147.798
0
80
1092
100
61
93
-2.231
50
11
75
18
21455
25135
0.381
0.1
-50
1
0
22_28S
120
1010
1291
810
62
140
140
167
156
92
99
95
0
607
638
207
32
295
295
306
82
26
95
81
0
0.359
0.297
0.3
0.31
2.479
0.213
0.497
120
1218
100
1181
1493
-1.478
869
312
1151
342
154956
76621
7.203
4.013
0
1
0
23_28S
140
2915
3221
1993
61
162
162
185
101
54
100
100
0
1224
1249
423
33
318
318
329
82
25
100
99
0
0.329
0.304
0.32
0.316
2.149
0.209
0.558
156
1356
100
3658
3989
-1.604
2752
906
3059
930
502578
194926
29.893
11.12
0
1
0
24_28S
150
3465
3718
1582
42
177
177
202
116
57
100
100
0
1238
1265
359
28
298
298
306
65
21
100
100
0
0.285
0.273
0.275
0.279
1.853
0.232
0.738
156
1732
100
4227
4507
-1.811
3288
939
3541
966
580204
197401
30.289
14.746
0
1
0
31_CD8 alpha
100
205
234
139
59
204
204
230
146
63
15
5
0
320
341
92
27
328
328
337
73
21
13
6
0
-2.431
0.429
0.674
0.627
4.576
0.116
0.047
80
918
100
-6
43
null
1
-7
30
13
18770
27307
0.031
0.06
-50
1
0
32_CD8 alpha
100
255
316
237
75
231
231
263
233
88
18
7
0
379
392
66
16
377
377
392
88
22
10
2
0
0.087
0.181
0.424
0.393
5.763
0.08
0.022
80
857
100
26
100
-3.523
24
2
85
15
25357
31366
0.226
0
-50
1
0
33_CD8 alpha
100
312
360
187
52
238
238
260
137
52
31
21
0
412
423
94
22
352
352
363
73
20
40
12
0
0.786
0.571
0.611
0.637
6.212
0.034
0.002
80
910
100
133
192
-0.347
74
59
122
70
28896
33886
0.73
0.806
-50
1
0
34_CD8 alpha
100
247
318
225
70
157
157
175
87
49
51
33
0
366
380
89
23
286
286
293
50
17
62
36
0
0.872
0.58
0.723
0.753
5.73
0.058
0.015
80
1103
100
168
253
-0.198
89
79
160
93
25500
30425
1.646
1.717
-50
1
0
35_CD8 alpha
70
433
527
339
64
148
148
165
79
48
96
78
0
445
472
127
27
295
295
298
56
18
84
62
0
0.526
0.469
0.48
0.434
3.381
0.051
0.014
32
634
100
433
556
-0.927
284
149
379
177
16891
15132
4.545
3.098
0
1
0
36_CD8 alpha
90
692
783
468
59
146
146
165
81
49
92
88
0
696
701
184
26
285
285
295
82
27
100
92
0
0.754
0.652
0.606
0.798
3.524
0.304
0.243
52
984
100
956
1051
-0.407
545
411
636
415
40734
36439
7.578
4.907
0
1
0
25_CD8 beta
100
165
200
111
55
152
152
175
129
74
15
7
0
270
276
41
15
263
263
274
72
26
7
2
0
0.405
0.252
0.444
0.446
6.347
0.062
0.015
80
922
100
18
61
-1.304
12
6
48
13
16039
22139
0.196
0.03
-50
1
0
26_CD8 beta
100
231
253
165
65
166
166
195
120
61
35
13
0
392
420
104
24
350
350
363
104
28
28
8
0
0.66
0.793
0.595
0.595
5.552
0.158
0.02
80
924
100
105
156
-0.599
64
41
87
69
20334
33612
0.489
0.537
-50
1
0
27_CD8 beta
100
243
272
195
72
172
172
208
157
75
20
7
0
324
335
61
18
308
308
319
89
27
16
1
0
0.203
0.254
0.479
0.424
6.951
0.04
0.006
80
935
100
85
125
-2.3
70
15
99
26
21795
26810
0.402
0.173
-50
1
0
28_CD8 beta
100
153
186
99
53
154
154
179
119
66
20
3
0
308
314
45
14
299
299
307
67
21
11
1
0
-9.724
0.405
0.568
0.472
3.539
0.035
0.002
80
1116
100
8
46
null
0
8
32
14
14930
25102
0.061
0.098
-50
1
0
29_CD8 beta
100
193
229
139
60
186
186
210
126
59
20
3
0
371
383
83
21
352
352
371
98
26
8
2
0
3.444
0.713
0.502
0.458
6.899
0.18
0.032
80
1066
100
24
72
1.784
6
18
42
30
18350
30708
0.151
0.124
-50
1
0
30_CD8 beta
100
182
203
95
46
184
184
282
865
306
0
0
0
330
336
60
18
317
317
339
156
46
2
0
0
-7.293
0.926
0.994
0.904
5.153
0.021
0.001
80
1019
100
12
37
null
-1
13
19
18
16264
26904
-0.091
-0.021
-50
1
0
1_EC 1
160
17341
18634
7724
41
227
227
257
164
63
100
100
0
28771
24268
10319
42
410
410
423
90
21
100
100
0
1.657
1.296
1.563
1.166
2.27
1.332
0.728
208
3451
100
45474
42263
0.729
17113
28361
18406
23857
3875899
5047707
111.934
263.756
-75
1
0
2_EC 1
150
15893
17611
5327
30
212
212
273
729
267
100
100
0
29288
27944
5246
18
403
403
422
114
27
100
100
0
1.842
1.583
1.829
1.605
1.674
1.443
0.74
156
2466
100
44566
44940
0.881
15681
28885
17399
27541
2747457
4359318
23.776
240.038
-75
1
0
Total number of rows:
14532
Table truncated, full table size
3272 Kbytes
.
Supplementary data files not provided
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