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Sample GSM67278 Query DataSets for GSM67278
Status Public on Dec 05, 2005
Title day 1 slide 5
Sample type RNA
 
Channel 1
Source name jejunum fast control d1
Organism Gallus gallus
Characteristics tissue: jejunum
infection: control
Extracted molecule total RNA
Label cy3
 
Channel 2
Source name jejunum slow control d1
Organism Gallus gallus
Characteristics tissue: jejunum
infection: control
Extracted molecule total RNA
Label cy5
 
 
Description comparison 2 chicken lines
Data processing genepix pro
 
Submission date Aug 05, 2005
Last update date Aug 16, 2005
Contact name Saskia van Hemert
E-mail(s) saskia.vanhemert@wur.nl
Organization name Animal Sciences Group
Street address PO box 65
City Lelystad
ZIP/Postal code 8200 AB
Country Netherlands
 
Platform ID GPL2719
Series (2)
GSE3066 Gene expression responses to a Salmonella infection in the chicken intestine differ between lines.
GSE3702 Early gene expression responses to a Salmonella infection in the chicken intestine

Data table header descriptions
ID_REF
Dia.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
VALUE
F532 Median - B532
F635 Median - B635
F532 Mean - B532
F635 Mean - B635
F532 Total Intensity
F635 Total Intensity
SNR 532
SNR 635
Flags
Normalize
Autoflag

Data table
ID_REF Dia. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. F635 Median F635 Mean F635 SD F635 CV B635 B635 Median B635 Mean B635 SD B635 CV % > B635+1SD % > B635+2SD F635 % Sat. Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) F Pixels B Pixels Circularity Sum of Medians (635/532) Sum of Means (635/532) VALUE F532 Median - B532 F635 Median - B635 F532 Mean - B532 F635 Mean - B635 F532 Total Intensity F635 Total Intensity SNR 532 SNR 635 Flags Normalize Autoflag
19_28S 100 171 187 87 46 147 147 169 107 63 21 2 0 265 272 48 17 263 263 271 60 22 18 0 0 0.146 0.226 0.731 0.703 3.757 0.142 0.025 80 1060 100 25 47 -2.776 23 2 39 8 14986 21789 0.169 0.018 -50 1 0
20_28S 100 242 282 195 69 147 147 176 136 77 36 16 0 320 338 65 19 317 317 327 90 27 11 3 0 0.047 0.156 0.574 0.371 7.774 0.009 0 80 1072 100 97 155 -4.411 94 3 135 20 22666 27074 0.775 0.122 -50 1 0
21_28S 100 243 268 158 59 193 193 220 126 57 31 11 0 306 314 71 22 295 295 306 77 25 11 6 0 0.213 0.234 0.295 0.262 3.89 147.798 0 80 1092 100 61 93 -2.231 50 11 75 18 21455 25135 0.381 0.1 -50 1 0
22_28S 120 1010 1291 810 62 140 140 167 156 92 99 95 0 607 638 207 32 295 295 306 82 26 95 81 0 0.359 0.297 0.3 0.31 2.479 0.213 0.497 120 1218 100 1181 1493 -1.478 869 312 1151 342 154956 76621 7.203 4.013 0 1 0
23_28S 140 2915 3221 1993 61 162 162 185 101 54 100 100 0 1224 1249 423 33 318 318 329 82 25 100 99 0 0.329 0.304 0.32 0.316 2.149 0.209 0.558 156 1356 100 3658 3989 -1.604 2752 906 3059 930 502578 194926 29.893 11.12 0 1 0
24_28S 150 3465 3718 1582 42 177 177 202 116 57 100 100 0 1238 1265 359 28 298 298 306 65 21 100 100 0 0.285 0.273 0.275 0.279 1.853 0.232 0.738 156 1732 100 4227 4507 -1.811 3288 939 3541 966 580204 197401 30.289 14.746 0 1 0
31_CD8 alpha 100 205 234 139 59 204 204 230 146 63 15 5 0 320 341 92 27 328 328 337 73 21 13 6 0 -2.431 0.429 0.674 0.627 4.576 0.116 0.047 80 918 100 -6 43 null 1 -7 30 13 18770 27307 0.031 0.06 -50 1 0
32_CD8 alpha 100 255 316 237 75 231 231 263 233 88 18 7 0 379 392 66 16 377 377 392 88 22 10 2 0 0.087 0.181 0.424 0.393 5.763 0.08 0.022 80 857 100 26 100 -3.523 24 2 85 15 25357 31366 0.226 0 -50 1 0
33_CD8 alpha 100 312 360 187 52 238 238 260 137 52 31 21 0 412 423 94 22 352 352 363 73 20 40 12 0 0.786 0.571 0.611 0.637 6.212 0.034 0.002 80 910 100 133 192 -0.347 74 59 122 70 28896 33886 0.73 0.806 -50 1 0
34_CD8 alpha 100 247 318 225 70 157 157 175 87 49 51 33 0 366 380 89 23 286 286 293 50 17 62 36 0 0.872 0.58 0.723 0.753 5.73 0.058 0.015 80 1103 100 168 253 -0.198 89 79 160 93 25500 30425 1.646 1.717 -50 1 0
35_CD8 alpha 70 433 527 339 64 148 148 165 79 48 96 78 0 445 472 127 27 295 295 298 56 18 84 62 0 0.526 0.469 0.48 0.434 3.381 0.051 0.014 32 634 100 433 556 -0.927 284 149 379 177 16891 15132 4.545 3.098 0 1 0
36_CD8 alpha 90 692 783 468 59 146 146 165 81 49 92 88 0 696 701 184 26 285 285 295 82 27 100 92 0 0.754 0.652 0.606 0.798 3.524 0.304 0.243 52 984 100 956 1051 -0.407 545 411 636 415 40734 36439 7.578 4.907 0 1 0
25_CD8 beta 100 165 200 111 55 152 152 175 129 74 15 7 0 270 276 41 15 263 263 274 72 26 7 2 0 0.405 0.252 0.444 0.446 6.347 0.062 0.015 80 922 100 18 61 -1.304 12 6 48 13 16039 22139 0.196 0.03 -50 1 0
26_CD8 beta 100 231 253 165 65 166 166 195 120 61 35 13 0 392 420 104 24 350 350 363 104 28 28 8 0 0.66 0.793 0.595 0.595 5.552 0.158 0.02 80 924 100 105 156 -0.599 64 41 87 69 20334 33612 0.489 0.537 -50 1 0
27_CD8 beta 100 243 272 195 72 172 172 208 157 75 20 7 0 324 335 61 18 308 308 319 89 27 16 1 0 0.203 0.254 0.479 0.424 6.951 0.04 0.006 80 935 100 85 125 -2.3 70 15 99 26 21795 26810 0.402 0.173 -50 1 0
28_CD8 beta 100 153 186 99 53 154 154 179 119 66 20 3 0 308 314 45 14 299 299 307 67 21 11 1 0 -9.724 0.405 0.568 0.472 3.539 0.035 0.002 80 1116 100 8 46 null 0 8 32 14 14930 25102 0.061 0.098 -50 1 0
29_CD8 beta 100 193 229 139 60 186 186 210 126 59 20 3 0 371 383 83 21 352 352 371 98 26 8 2 0 3.444 0.713 0.502 0.458 6.899 0.18 0.032 80 1066 100 24 72 1.784 6 18 42 30 18350 30708 0.151 0.124 -50 1 0
30_CD8 beta 100 182 203 95 46 184 184 282 865 306 0 0 0 330 336 60 18 317 317 339 156 46 2 0 0 -7.293 0.926 0.994 0.904 5.153 0.021 0.001 80 1019 100 12 37 null -1 13 19 18 16264 26904 -0.091 -0.021 -50 1 0
1_EC 1 160 17341 18634 7724 41 227 227 257 164 63 100 100 0 28771 24268 10319 42 410 410 423 90 21 100 100 0 1.657 1.296 1.563 1.166 2.27 1.332 0.728 208 3451 100 45474 42263 0.729 17113 28361 18406 23857 3875899 5047707 111.934 263.756 -75 1 0
2_EC 1 150 15893 17611 5327 30 212 212 273 729 267 100 100 0 29288 27944 5246 18 403 403 422 114 27 100 100 0 1.842 1.583 1.829 1.605 1.674 1.443 0.74 156 2466 100 44566 44940 0.881 15681 28885 17399 27541 2747457 4359318 23.776 240.038 -75 1 0

Total number of rows: 14532

Table truncated, full table size 3272 Kbytes.




Supplementary data files not provided

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