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GEO accession:
Sample GSM67061
Query DataSets for GSM67061
Status
Public on Aug 04, 2005
Title
IR29 salt stressed replicate 2
Sample type
RNA
Source name
crown and growing point
Organism
Oryza sativa Indica Group
Characteristics
salt-tolerant salt stressed
Extracted molecule
total RNA
Extraction protocol
Approximately 12 plants were dissected to obtain the crown and growing point tissue
Label
biotin
Label protocol
Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
IR29 salt stressed
Data processing
GCOS 1.2
Submission date
Aug 03, 2005
Last update date
Aug 03, 2005
Contact name
HARKAMAL WALIA
E-mail(s)
waliah02@student.ucr.edu
Phone
951-827-3808
Organization name
University of California
Street address
Department of Botany & Plant Sciecnes
City
Riverside
State/province
CA
ZIP/Postal code
92521
Country
USA
Platform ID
GPL2025
Series (1)
GSE3053
Rice salt expression
Data table header descriptions
ID_REF
VALUE
GCOS12-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
596.8
P
0.000225
AFFX-BioB-M_at
531.9
P
0.000052
AFFX-BioB-3_at
378.5
P
0.000044
AFFX-BioC-5_at
828.7
P
0.000052
AFFX-BioC-3_at
882.6
P
0.00007
AFFX-BioDn-5_at
2541.6
P
0.000044
AFFX-BioDn-3_at
6402.1
P
0.000044
AFFX-CreX-5_at
14346
P
0.000044
AFFX-CreX-3_at
18900.9
P
0.000044
AFFX-DapX-5_at
1746.3
P
0.000044
AFFX-DapX-M_at
3346.1
P
0.000052
AFFX-DapX-3_at
5631.1
P
0.000044
AFFX-LysX-5_at
298.9
P
0.000044
AFFX-LysX-M_at
417.9
P
0.002275
AFFX-LysX-3_at
857.2
P
0.000052
AFFX-PheX-5_at
451.5
P
0.000044
AFFX-PheX-M_at
570.2
P
0.00006
AFFX-PheX-3_at
498.5
P
0.000044
AFFX-ThrX-5_at
467.4
P
0.000052
AFFX-ThrX-M_at
844.8
P
0.000044
Total number of rows:
57381
Table truncated, full table size
1958 Kbytes
.
Supplementary data files not provided
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