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GEO accession:
Sample GSM67058
Query DataSets for GSM67058
Status
Public on Aug 04, 2005
Title
IR29 control replicate 1
Sample type
RNA
Source name
crown and growing point
Organism
Oryza sativa Indica Group
Characteristics
salt-tolerant control
Extracted molecule
total RNA
Extraction protocol
Approximately 12 plants were dissected to obtain the crown and growing point tissue
Label
biotin
Label protocol
Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
IR29 control
Data processing
GCOS 1.2
Submission date
Aug 03, 2005
Last update date
Aug 03, 2005
Contact name
HARKAMAL WALIA
E-mail(s)
waliah02@student.ucr.edu
Phone
951-827-3808
Organization name
University of California
Street address
Department of Botany & Plant Sciecnes
City
Riverside
State/province
CA
ZIP/Postal code
92521
Country
USA
Platform ID
GPL2025
Series (1)
GSE3053
Rice salt expression
Data table header descriptions
ID_REF
VALUE
GCOS12-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
404.1
P
0.004484
AFFX-BioB-M_at
247
P
0.00039
AFFX-BioB-3_at
203.7
P
0.000446
AFFX-BioC-5_at
472.8
P
0.00007
AFFX-BioC-3_at
508.9
P
0.00007
AFFX-BioDn-5_at
1291.3
P
0.000044
AFFX-BioDn-3_at
4152.9
P
0.00006
AFFX-CreX-5_at
8491.3
P
0.000044
AFFX-CreX-3_at
12124.5
P
0.000044
AFFX-DapX-5_at
1398.9
P
0.00006
AFFX-DapX-M_at
2771.3
P
0.000052
AFFX-DapX-3_at
4745.5
P
0.000044
AFFX-LysX-5_at
172.2
P
0.000147
AFFX-LysX-M_at
361.3
P
0.013811
AFFX-LysX-3_at
1005.5
P
0.000225
AFFX-PheX-5_at
349.5
P
0.000225
AFFX-PheX-M_at
328.6
P
0.00006
AFFX-PheX-3_at
515.3
P
0.00006
AFFX-ThrX-5_at
385.2
P
0.000127
AFFX-ThrX-M_at
646.4
P
0.000044
Total number of rows:
57381
Table truncated, full table size
1961 Kbytes
.
Supplementary data files not provided
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