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Sample GSM67058 Query DataSets for GSM67058
Status Public on Aug 04, 2005
Title IR29 control replicate 1
Sample type RNA
Source name crown and growing point
Organism Oryza sativa Indica Group
Characteristics salt-tolerant control
Extracted molecule total RNA
Extraction protocol Approximately 12 plants were dissected to obtain the crown and growing point tissue
Label biotin
Label protocol Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description IR29 control
Data processing GCOS 1.2
Submission date Aug 03, 2005
Last update date Aug 03, 2005
Phone 951-827-3808
Organization name University of California
Street address Department of Botany & Plant Sciecnes
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
Platform ID GPL2025
Series (1)
GSE3053 Rice salt expression

Data table header descriptions
VALUE GCOS12-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 404.1 P 0.004484
AFFX-BioB-M_at 247 P 0.00039
AFFX-BioB-3_at 203.7 P 0.000446
AFFX-BioC-5_at 472.8 P 0.00007
AFFX-BioC-3_at 508.9 P 0.00007
AFFX-BioDn-5_at 1291.3 P 0.000044
AFFX-BioDn-3_at 4152.9 P 0.00006
AFFX-CreX-5_at 8491.3 P 0.000044
AFFX-CreX-3_at 12124.5 P 0.000044
AFFX-DapX-5_at 1398.9 P 0.00006
AFFX-DapX-M_at 2771.3 P 0.000052
AFFX-DapX-3_at 4745.5 P 0.000044
AFFX-LysX-5_at 172.2 P 0.000147
AFFX-LysX-M_at 361.3 P 0.013811
AFFX-LysX-3_at 1005.5 P 0.000225
AFFX-PheX-5_at 349.5 P 0.000225
AFFX-PheX-M_at 328.6 P 0.00006
AFFX-PheX-3_at 515.3 P 0.00006
AFFX-ThrX-5_at 385.2 P 0.000127
AFFX-ThrX-M_at 646.4 P 0.000044

Total number of rows: 57381

Table truncated, full table size 1961 Kbytes.

Supplementary data files not provided

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