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Sample GSM67056 Query DataSets for GSM67056
Status Public on Aug 04, 2005
Title FL478 salt stressed replicate 2
Sample type RNA
Source name crown and growing point
Organism Oryza sativa Indica Group
Characteristics salt-tolerant salt stressed
Extracted molecule total RNA
Extraction protocol Approximately 12 plants were dissected to obtain the crown and growing point tissue
Label biotin
Label protocol Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description FL478 salt stressed
Data processing GCOS 1.2
Submission date Aug 03, 2005
Last update date Aug 03, 2005
Phone 951-827-3808
Organization name University of California
Street address Department of Botany & Plant Sciecnes
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
Platform ID GPL2025
Series (1)
GSE3053 Rice salt expression

Data table header descriptions
VALUE GCOS12-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 525.2 P 0.001102
AFFX-BioB-M_at 423.3 P 0.000081
AFFX-BioB-3_at 293.3 P 0.000044
AFFX-BioC-5_at 677 P 0.00006
AFFX-BioC-3_at 659.1 P 0.000044
AFFX-BioDn-5_at 1940.9 P 0.000044
AFFX-BioDn-3_at 5042.8 P 0.000052
AFFX-CreX-5_at 10670.2 P 0.000044
AFFX-CreX-3_at 13354.5 P 0.000044
AFFX-DapX-5_at 1981.6 P 0.000044
AFFX-DapX-M_at 3848.9 P 0.000052
AFFX-DapX-3_at 5643 P 0.000044
AFFX-LysX-5_at 272.7 P 0.000044
AFFX-LysX-M_at 511.5 P 0.004017
AFFX-LysX-3_at 1178.6 P 0.000052
AFFX-PheX-5_at 536.2 P 0.00007
AFFX-PheX-M_at 521.3 P 0.00007
AFFX-PheX-3_at 641.3 P 0.000044
AFFX-ThrX-5_at 479.6 P 0.000044
AFFX-ThrX-M_at 945.4 P 0.000044

Total number of rows: 57381

Table truncated, full table size 1960 Kbytes.

Supplementary data files not provided

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