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Sample GSM6637629

Query DataSets for GSM6637629

Status

Public on Oct 16, 2022

Title

DNase-seq from adrenal gland (ENCLB705BNH)

Sample type

SRA

Source name

Mus musculus strain B6CASTF1/J female adult (18-20 months) adrenal gland tissue

Organism

Mus musculus

Characteristics

tissue_type: adrenal gland
biomaterial_type: tissue
description: B6Cast F1 DPN18-20months
biosample encode accession: ENCBS772VQG (SAMN30347971)
Sex: female
dev stage: adult
age: 18-20 month
donor_id: ENCDO509HIY
lab: Barbara Wold, Caltech
source: The Jackson Laboratory
link: ENCBS772VQG at ENCODE; https://www.encodeproject.org/ENCBS772VQG/
link: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/

Extracted molecule

genomic DNA

Extraction protocol

extraction protocol: https://www.encodeproject.org/documents/980de32c-f7ec-4cd7-b736-61faf723c186/@@download/attachment/newnuclei_isolation_from_human_tissue-combined.pdf

Library strategy

DNase-Hypersensitivity

Library source

genomic

Library selection

DNAse

Instrument model

Illumina NovaSeq 6000

Description

https://www.encodeproject.org/experiments/ENCSR406JCQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR406JCQ
assay title: DNase-seq
assembly: mm10
encode release date: 2022-04-07
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB705BNH

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Oct 13, 2022

Last update date

Oct 17, 2022

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL24247

Series (1)

GSE215486

DNase-seq from adrenal gland (ENCSR406JCQ)

Relations

BioSample

SAMN30347971

SRA

SRX17911701

Supplementary file	Size	Download	File type/resource
GSM6637629_ENCFF007NFR_FDR_cut_rate_mm10.bed.gz	180.5 Mb	(ftp)(http)	BED
GSM6637629_ENCFF035UFC_footprints_mm10.bigBed	2.4 Mb	(ftp)(http)	BIGBED
GSM6637629_ENCFF038USD_FDR_cut_rate_mm10.bigBed	180.6 Mb	(ftp)(http)	BIGBED
GSM6637629_ENCFF054VQN_peaks_mm10.bigBed	1.7 Mb	(ftp)(http)	BIGBED
GSM6637629_ENCFF320HFD_footprints_mm10.bed.gz	1.7 Mb	(ftp)(http)	BED
GSM6637629_ENCFF327NEV_peaks_mm10.starch	768.2 Kb	(ftp)(http)	STARCH
GSM6637629_ENCFF347OHB_read-depth_normalized_signal_mm10.bigWig	601.1 Mb	(ftp)(http)	BIGWIG
GSM6637629_ENCFF536YDE_peaks_mm10.bed.gz	679.2 Kb	(ftp)(http)	BED
GSM6637629_ENCFF844RXQ_peaks_mm10.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSM6637629_ENCFF896MCQ_peaks_mm10.bed.gz	1.1 Mb	(ftp)(http)	BED
GSM6637629_ENCLB705BNH_README.txt.gz	1.0 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file