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Sample GSM6637607

Query DataSets for GSM6637607

Status

Public on Oct 16, 2022

Title

DNase-seq from left cerebral cortex (ENCLB459KBM)

Sample type

SRA

Source name

Mus musculus strain B6CASTF1/J male (36 days) left cerebral cortex tissue

Organism

Mus musculus

Characteristics

tissue_type: left cerebral cortex
biomaterial_type: tissue
description: B6Cast F1 PND36 Male 05 left cerebral cortex for Altius Stam biobank
biosample encode accession: ENCBS447YRF (SAMN30347784)
Sex: male
dev stage: not collected
age: 36 day
donor_id: ENCDO509HIY
lab: Barbara Wold, Caltech
source: The Jackson Laboratory
link: ENCBS447YRF at ENCODE; https://www.encodeproject.org/ENCBS447YRF/
link: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/

Extracted molecule

genomic DNA

Extraction protocol

extraction protocol: https://www.encodeproject.org/documents/980de32c-f7ec-4cd7-b736-61faf723c186/@@download/attachment/newnuclei_isolation_from_human_tissue-combined.pdf

Library strategy

DNase-Hypersensitivity

Library source

genomic

Library selection

DNAse

Instrument model

Illumina NovaSeq 6000

Description

https://www.encodeproject.org/experiments/ENCSR200TAZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR200TAZ
assay title: DNase-seq
assembly: mm10
encode release date: 2022-04-07
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB459KBM

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Oct 13, 2022

Last update date

Oct 17, 2022

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL24247

Series (1)

GSE215468

DNase-seq from left cerebral cortex (ENCSR200TAZ)

Relations

BioSample

SAMN30347784

SRA

SRX17911679

Supplementary file	Size	Download	File type/resource
GSM6637607_ENCFF182YIS_peaks_mm10.bed.gz	657.9 Kb	(ftp)(http)	BED
GSM6637607_ENCFF262BJB_FDR_cut_rate_mm10.bed.gz	133.0 Mb	(ftp)(http)	BED
GSM6637607_ENCFF274NPD_peaks_mm10.bed.gz	1.1 Mb	(ftp)(http)	BED
GSM6637607_ENCFF626OLM_read-depth_normalized_signal_mm10.bigWig	594.8 Mb	(ftp)(http)	BIGWIG
GSM6637607_ENCFF792ZSN_peaks_mm10.bigBed	1.8 Mb	(ftp)(http)	BIGBED
GSM6637607_ENCFF843UDZ_peaks_mm10.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSM6637607_ENCFF899CLW_footprints_mm10.bigBed	1.7 Mb	(ftp)(http)	BIGBED
GSM6637607_ENCFF901HPJ_footprints_mm10.bed.gz	1.5 Mb	(ftp)(http)	BED
GSM6637607_ENCFF942UWE_FDR_cut_rate_mm10.bigBed	138.0 Mb	(ftp)(http)	BIGBED
GSM6637607_ENCFF983ETE_peaks_mm10.starch	750.1 Kb	(ftp)(http)	STARCH
GSM6637607_ENCLB459KBM_README.txt.gz	1.0 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file