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Sample GSM646570 Query DataSets for GSM646570
Status Public on Dec 29, 2010
Title UW_DnaseDgf_HMVEC-dBl-Ad
Sample type SRA
Source name HMVEC-dBl-Ad
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: HMVEC-dBl-Ad
cell organism: human
cell description: adult blood microvascular endothelial cells, dermal-derived
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
labversion: lmax-v1.0
Biomaterial provider Lonza
Growth protocol HMVEC-dBl-Ad_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Dec 28, 2010
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
SRA SRX037119
BioSample SAMN00189411
Named Annotation GSM646570_hg19_wgEncodeUwDgfHmvecdbladRaw.bigWig
Named Annotation GSM646570_hg19_wgEncodeUwDgfHmvecdbladSig.bigWig

Supplementary file Size Download File type/resource
GSM646570_hg19_wgEncodeUwDgfHmvecdbladAln.bam 7.4 Gb (ftp)(http) BAM
GSM646570_hg19_wgEncodeUwDgfHmvecdbladHotspots.broadPeak.txt.gz 2.7 Mb (ftp)(http) TXT
GSM646570_hg19_wgEncodeUwDgfHmvecdbladPk.narrowPeak.txt.gz 2.0 Mb (ftp)(http) TXT
GSM646570_hg19_wgEncodeUwDgfHmvecdbladPkV2.narrowPeak.gz 2.2 Mb (ftp)(http) NARROWPEAK
GSM646570_hg19_wgEncodeUwDgfHmvecdbladRaw.bigWig 319.9 Mb (ftp)(http) BIGWIG
GSM646570_hg19_wgEncodeUwDgfHmvecdbladSig.bigWig 411.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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