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Sample GSM646568 Query DataSets for GSM646568
Status Public on Dec 29, 2010
Title Stam_GM06990
Sample type SRA
Source name GM06990
Organism Homo sapiens
Characteristics cell: GM06990
cell organism: Human
cell description: lymphoblastoid (CEPH)
cell karyotype: relatively normal
cell lineage: CEPH/Utah - European Caucasion; Epstein-Barr Virus
cell sex: F
Biomaterial provider Coriell
Growth protocol Cells were grown according to ENCODE cell culture protocols:
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
Data processing For data processing details see:
Submission date Dec 28, 2010
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
SRA SRX037117
BioSample SAMN00189409
Named Annotation GSM646568_hg19_wgEncodeUwDgfGm06990Raw.bigWig
Named Annotation GSM646568_hg19_wgEncodeUwDgfGm06990Sig.bigWig

Supplementary file Size Download File type/resource
GSM646568_hg19_wgEncodeUwDgfGm06990Aln.bam 4.4 Gb (ftp)(http) BAM
GSM646568_hg19_wgEncodeUwDgfGm06990Hotspots.broadPeak.txt.gz 2.7 Mb (ftp)(http) TXT
GSM646568_hg19_wgEncodeUwDgfGm06990Pk.narrowPeak.txt.gz 1.7 Mb (ftp)(http) TXT
GSM646568_hg19_wgEncodeUwDgfGm06990Raw.bigWig 263.8 Mb (ftp)(http) BIGWIG
GSM646568_hg19_wgEncodeUwDgfGm06990Sig.bigWig 285.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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