GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM646565 Query DataSets for GSM646565
Status Public on Dec 29, 2010
Title UW_DnaseDgf_HCPEpiC
Sample type SRA
Source name HCPEpiC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: HCPEpiC
cell organism: human
cell description: choroid plexus epithelial cells
cell lineage: ectoderm
cell sex: U
labversion: lmax-v1.0
Biomaterial provider ScienCell
Growth protocol HCPEpiC_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Dec 28, 2010
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
SRA SRX037114
BioSample SAMN00189406
Named Annotation GSM646565_hg19_wgEncodeUwDgfHcpeRaw.bigWig
Named Annotation GSM646565_hg19_wgEncodeUwDgfHcpeSig.bigWig

Supplementary file Size Download File type/resource
GSM646565_hg19_wgEncodeUwDgfHcpeAln.bam 8.6 Gb (ftp)(http) BAM
GSM646565_hg19_wgEncodeUwDgfHcpeHotspots.broadPeak.txt.gz 4.2 Mb (ftp)(http) TXT
GSM646565_hg19_wgEncodeUwDgfHcpePk.narrowPeak.txt.gz 3.1 Mb (ftp)(http) TXT
GSM646565_hg19_wgEncodeUwDgfHcpePkV2.narrowPeak.gz 3.3 Mb (ftp)(http) NARROWPEAK
GSM646565_hg19_wgEncodeUwDgfHcpeRaw.bigWig 304.7 Mb (ftp)(http) BIGWIG
GSM646565_hg19_wgEncodeUwDgfHcpeSig.bigWig 424.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap