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Sample GSM646564 Query DataSets for GSM646564
Status Public on Dec 29, 2010
Title UW_DnaseDgf_NHDF-Ad
Sample type SRA
Source name NHDF-Ad
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: NHDF-Ad
cell organism: human
cell description: adult dermal fibroblasts
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
labversion: lmax-v1.0
Biomaterial provider Lonza
Growth protocol NHDF-Ad_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Dec 28, 2010
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
SRA SRX037113
BioSample SAMN00189405
Named Annotation GSM646564_hg19_wgEncodeUwDgfNhdfadRaw.bigWig
Named Annotation GSM646564_hg19_wgEncodeUwDgfNhdfadSig.bigWig

Supplementary file Size Download File type/resource
GSM646564_hg19_wgEncodeUwDgfNhdfadAln.bam 8.3 Gb (ftp)(http) BAM
GSM646564_hg19_wgEncodeUwDgfNhdfadHotspots.broadPeak.txt.gz 4.1 Mb (ftp)(http) TXT
GSM646564_hg19_wgEncodeUwDgfNhdfadPk.narrowPeak.txt.gz 3.0 Mb (ftp)(http) TXT
GSM646564_hg19_wgEncodeUwDgfNhdfadPkV2.narrowPeak.gz 3.3 Mb (ftp)(http) NARROWPEAK
GSM646564_hg19_wgEncodeUwDgfNhdfadRaw.bigWig 278.1 Mb (ftp)(http) BIGWIG
GSM646564_hg19_wgEncodeUwDgfNhdfadSig.bigWig 366.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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