GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM646563 Query DataSets for GSM646563
Status Public on Dec 29, 2010
Title UW_DnaseDgf_H7-hESC
Sample type SRA
Source name H7-hESC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: H7-hESC
cell organism: human
cell description: undifferentiated embryonic stem cells
cell lineage: inner cell mass
cell sex: U
labversion: lmax-v1.0
Biomaterial provider WiCell
Growth protocol H7-hESC_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Dec 28, 2010
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
GSE51341 Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence
SRA SRX037112
BioSample SAMN00189404
Named Annotation GSM646563_hg19_wgEncodeUwDgfH7esRaw.bigWig
Named Annotation GSM646563_hg19_wgEncodeUwDgfH7esSig.bigWig

Supplementary file Size Download File type/resource
GSM646563_hg19_wgEncodeUwDgfH7esAln.bam 10.2 Gb (ftp)(http) BAM
GSM646563_hg19_wgEncodeUwDgfH7esHotspots.broadPeak.txt.gz 6.7 Mb (ftp)(http) TXT
GSM646563_hg19_wgEncodeUwDgfH7esPk.narrowPeak.txt.gz 4.9 Mb (ftp)(http) TXT
GSM646563_hg19_wgEncodeUwDgfH7esPkV2.narrowPeak.gz 5.1 Mb (ftp)(http) NARROWPEAK
GSM646563_hg19_wgEncodeUwDgfH7esRaw.bigWig 344.8 Mb (ftp)(http) BIGWIG
GSM646563_hg19_wgEncodeUwDgfH7esSig.bigWig 552.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap