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Sample GSM646562 Query DataSets for GSM646562
Status Public on Dec 29, 2010
Title UW_DnaseDgf_SKMC
Sample type SRA
Source name SKMC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: SKMC
cell organism: human
cell description: skeletal muscle cells
cell lineage: mesoderm
cell sex: U
labversion: lmax-v1.0
Biomaterial provider Lonza
Growth protocol SkMC_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Dec 28, 2010
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
SRA SRX037111
BioSample SAMN00189403
Named Annotation GSM646562_hg19_wgEncodeUwDgfSkmcRaw.bigWig
Named Annotation GSM646562_hg19_wgEncodeUwDgfSkmcSig.bigWig

Supplementary file Size Download File type/resource
GSM646562_hg19_wgEncodeUwDgfSkmcAln.bam 17.4 Gb (ftp)(http) BAM
GSM646562_hg19_wgEncodeUwDgfSkmcHotspots.broadPeak.txt.gz 4.4 Mb (ftp)(http) TXT
GSM646562_hg19_wgEncodeUwDgfSkmcPk.narrowPeak.txt.gz 3.4 Mb (ftp)(http) TXT
GSM646562_hg19_wgEncodeUwDgfSkmcPkV2.narrowPeak.gz 3.6 Mb (ftp)(http) NARROWPEAK
GSM646562_hg19_wgEncodeUwDgfSkmcRaw.bigWig 355.9 Mb (ftp)(http) BIGWIG
GSM646562_hg19_wgEncodeUwDgfSkmcSig.bigWig 622.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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