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Sample GSM646561 Query DataSets for GSM646561
Status Public on Dec 29, 2010
Title UW_DnaseDgf_HMF
Sample type SRA
Source name HMF
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: HMF
cell organism: human
cell description: mammary fibroblasts
cell sex: F
labversion: lmax-v1.0
Biomaterial provider ScienCell
Growth protocol HMF_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Dec 28, 2010
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
SRA SRX037110
BioSample SAMN00189402
Named Annotation GSM646561_hg19_wgEncodeUwDgfHmfRaw.bigWig
Named Annotation GSM646561_hg19_wgEncodeUwDgfHmfSig.bigWig

Supplementary file Size Download File type/resource
GSM646561_hg19_wgEncodeUwDgfHmfAln.bam 8.0 Gb (ftp)(http) BAM
GSM646561_hg19_wgEncodeUwDgfHmfHotspots.broadPeak.txt.gz 3.7 Mb (ftp)(http) TXT
GSM646561_hg19_wgEncodeUwDgfHmfPk.narrowPeak.txt.gz 2.7 Mb (ftp)(http) TXT
GSM646561_hg19_wgEncodeUwDgfHmfPkV2.narrowPeak.gz 2.9 Mb (ftp)(http) NARROWPEAK
GSM646561_hg19_wgEncodeUwDgfHmfRaw.bigWig 328.5 Mb (ftp)(http) BIGWIG
GSM646561_hg19_wgEncodeUwDgfHmfSig.bigWig 452.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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