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Sample GSM646560 Query DataSets for GSM646560
Status Public on Dec 29, 2010
Title UW_DnaseDgf_HAEpiC
Sample type SRA
Source name HAEpiC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: HAEpiC
cell organism: human
cell description: amniotic epithelial cells
cell sex: U
labversion: lmax-v1.0
Biomaterial provider ScienCell
Growth protocol HAEpiC_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Dec 28, 2010
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
SRA SRX037109
BioSample SAMN00189401
Named Annotation GSM646560_hg19_wgEncodeUwDgfHaeRaw.bigWig
Named Annotation GSM646560_hg19_wgEncodeUwDgfHaeSig.bigWig

Supplementary file Size Download File type/resource
GSM646560_hg19_wgEncodeUwDgfHaeAln.bam 9.5 Gb (ftp)(http) BAM
GSM646560_hg19_wgEncodeUwDgfHaeHotspots.broadPeak.txt.gz 4.1 Mb (ftp)(http) TXT
GSM646560_hg19_wgEncodeUwDgfHaePk.narrowPeak.txt.gz 3.0 Mb (ftp)(http) TXT
GSM646560_hg19_wgEncodeUwDgfHaePkV2.narrowPeak.gz 3.2 Mb (ftp)(http) NARROWPEAK
GSM646560_hg19_wgEncodeUwDgfHaeRaw.bigWig 321.2 Mb (ftp)(http) BIGWIG
GSM646560_hg19_wgEncodeUwDgfHaeSig.bigWig 447.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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