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Sample GSM646559 Query DataSets for GSM646559
Status Public on Dec 29, 2010
Title Stam_HepG2
Sample type SRA
Source name HepG2
Organism Homo sapiens
Characteristics cell: HepG2
cell organism: Human
cell description: liver carcinoma
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
Biomaterial provider ATCC
Growth protocol Cells were grown according to ENCODE cell culture protocols:
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
Data processing For data processing details see:
Submission date Dec 28, 2010
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
SRA SRX037108
BioSample SAMN00189400
Named Annotation GSM646559_hg19_wgEncodeUwDgfHepg2Raw.bigWig
Named Annotation GSM646559_hg19_wgEncodeUwDgfHepg2Sig.bigWig

Supplementary file Size Download File type/resource
GSM646559_hg19_wgEncodeUwDgfHepg2Aln.bam 5.2 Gb (ftp)(http) BAM
GSM646559_hg19_wgEncodeUwDgfHepg2Hotspots.broadPeak.txt.gz 2.8 Mb (ftp)(http) TXT
GSM646559_hg19_wgEncodeUwDgfHepg2Pk.narrowPeak.txt.gz 1.7 Mb (ftp)(http) TXT
GSM646559_hg19_wgEncodeUwDgfHepg2Raw.bigWig 294.1 Mb (ftp)(http) BIGWIG
GSM646559_hg19_wgEncodeUwDgfHepg2Sig.bigWig 328.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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