GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM641427 Query DataSets for GSM641427
Status Public on Dec 04, 2016
Title ChIP_ER_Veh
Sample type SRA
Source name Cell line
Organism Homo sapiens
Characteristics strain: U2OS-ERalpha (stable)
antibody: anti-ERalpha HC20
antibody vendor, catalog#: Santa Cruz, sc-543
Extracted molecule genomic DNA
Extraction protocol Purified DNA given A overhang by Klenow exo, adapters ligated, gel size selected (300±25bp), PCR amplified and sequenced
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing Reads are mapped to genome using ELAND. Reads that are uniquely mapped and have no more than 2 mismatches are selected for future analysis. MACS is used to call peaks with p value 1e-10.
Submission date Dec 16, 2010
Last update date May 15, 2019
Contact name kaifu chen
Organization name Baylor College of Medicine
Street address 1 Baylor plaza, suite 450A
City Houston
ZIP/Postal code 77030
Country USA
Platform ID GPL9115
Series (1)
GSE26110 Genome-wide analysis of SRC-1/NCOA1 and Erα/ESR1 binding in chromatin obtained from the ERα stably transfected U2OS osteosarcoma cell line (U2OS-ERα) with ChIP-SEQ.
SRA SRX036636
BioSample SAMN00189068

Supplementary file Size Download File type/resource
GSM641427_ER_Veh_export.txt.gz 651.0 Mb (ftp)(http) TXT
GSM641427_ER_Veh_sorted.txt.gz 329.9 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap