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GEO accession:
Sample GSM639885
Query DataSets for GSM639885
Status
Public on Dec 15, 2010
Title
Suprabasal epidermal cells, Sample 2 replicate
Sample type
RNA
Source name
Human epidermis from brest reduction
Organism
Homo sapiens
Characteristics
cell type: Suprabasal epidermal cells
donor: 2
Extracted molecule
total RNA
Extraction protocol
Standard Affymetrix protocol
Label
Biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol
Scan protocol
Standard Affymetrix protocol
Data processing
MAS 5.0
Submission date
Dec 14, 2010
Last update date
Dec 15, 2010
Contact name
Miroslav Blumenberg
E-mail(s)
miroslav.blumenberg@nyumc.org
Phone
212 263-5924
Organization name
NYU School of Medicine
Department
Dermatology
Lab
Blumenberg
Street address
455 First Ave #874
City
New York
State/province
NY
ZIP/Postal code
10016
Country
USA
Platform ID
GPL571
Series (1)
GSE26059
Epidermal differentiation: basal vs. suprabasal keratinocytes
Data table header descriptions
ID_REF
VALUE
Signal
ABS_CALL
indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
233.032
P
0.000389797
AFFX-BioB-M_at
413.467
P
5.16732e-05
AFFX-BioB-3_at
248.112
P
0.00010954
AFFX-BioC-5_at
531.915
P
6.02111e-05
AFFX-BioC-3_at
512.109
P
4.42873e-05
AFFX-BioDn-5_at
697.876
P
4.42873e-05
AFFX-BioDn-3_at
3323.9
P
7.00668e-05
AFFX-CreX-5_at
7032.15
P
5.16732e-05
AFFX-CreX-3_at
7485.64
P
4.42873e-05
AFFX-DapX-5_at
1.6409
A
0.699394
AFFX-DapX-M_at
3.33767
A
0.51489
AFFX-DapX-3_at
1.10343
A
0.990663
AFFX-LysX-5_at
11.4612
M
0.0584438
AFFX-LysX-M_at
7.65948
A
0.559354
AFFX-LysX-3_at
0.652177
A
0.891041
AFFX-PheX-5_at
6.53474
A
0.52976
AFFX-PheX-M_at
0.502197
A
0.979978
AFFX-PheX-3_at
4.02778
A
0.52976
AFFX-ThrX-5_at
3.36025
A
0.559354
AFFX-ThrX-M_at
2.63263
A
0.712257
Total number of rows:
22277
Table truncated, full table size
670 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM639885_Alix_B4-_B1-_3_U133A2.0.CEL.gz
2.0 Mb
(ftp)
(http)
CEL
GSM639885_Alix_B4-_B1-_3_U133A2.0.CHP.gz
441.3 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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