gender: female age: 58y tissue: melanoma primum from patients back
Extracted molecule
genomic DNA
Extraction protocol
DNA was isolated by using the All Prep DNA Kit (Qiagen, Hilden, Germany) according to the manufacturer’s protocol.
Label
biotin
Label protocol
According to manufacturer protocol Affymetrix dsDNA terminal label
Hybridization protocol
According to manufacturer protocol
Scan protocol
According to manufacturer protocol
Data processing
CEL files were processed via the genotyping console 3.0.1 using default parameters. CHP files were generated via the genotyping console 3.0.1 using default parameters. Normalization was performed using the birdseed v2 algorithm.
Genotype Call (SNP call): AA, AB, BB, NC, and NoCall
CONFIDENCE
A value in the range [0,1] with lower values corresponding to greater confidence
FORCED CALL
This value is the genotyping call that would be made if the calling algorithm were tuned to the least stringency. Providing this value allows for determining what the calls would have been at a stringency different to that applied to the calls in the second field, without having to re-run the genotyping algorithm
