GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM60917
Query DataSets for GSM60917
Status
Public on Jun 14, 2005
Title
cMyb virus-infected replicate 1 (MCF7)
Sample type
RNA
Source name
MCF7 cells
Organism
Homo sapiens
Characteristics
Mammary cell line
Extracted molecule
total RNA
Extraction protocol
Approximately 1x10^6 cells were infected with adenovirus expressing c-Myb and GFP for 16 hours, then total RNA was isolated using RNEasy kit (Qiagen).
Label
biotin
Label protocol
Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Adenovirus-infected MCF7 cells
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Jun 14, 2005
Last update date
Jun 14, 2005
Contact name
Scott A. Ness
E-mail(s)
sness@salud.unm.edu
Phone
505-272-9883
Organization name
U. of New Mexico HSC
Department
Internal Medicine
Lab
Ness
Street address
MSC07 4025 - CRF 121
City
Albuquerque
State/province
NM
ZIP/Postal code
87131-0001
Country
USA
Platform ID
GPL96
Series (1)
GSE2815
cMyb and vMyb in MCF7 cells
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
2760.6
P
0.000169
AFFX-BioB-M_at
6179.5
P
0.000044
AFFX-BioB-3_at
2976.4
P
0.00006
AFFX-BioC-5_at
6573.3
P
0.000044
AFFX-BioC-3_at
5563.6
P
0.000044
AFFX-BioDn-5_at
5821.6
P
0.000052
AFFX-BioDn-3_at
29009.3
P
0.000052
AFFX-CreX-5_at
51157.7
P
0.000044
AFFX-CreX-3_at
71804.6
P
0.000044
AFFX-DapX-5_at
70.9
A
0.131361
AFFX-DapX-M_at
81.3
A
0.470241
AFFX-DapX-3_at
45.7
A
0.60308
AFFX-LysX-5_at
22.3
A
0.814869
AFFX-LysX-M_at
125.4
A
0.185131
AFFX-LysX-3_at
14.3
A
0.617401
AFFX-PheX-5_at
2.8
A
0.993813
AFFX-PheX-M_at
8.8
A
0.868639
AFFX-PheX-3_at
27
A
0.891021
AFFX-ThrX-5_at
88.7
A
0.262827
AFFX-ThrX-M_at
12.8
A
0.760937
Total number of rows:
22283
Table truncated, full table size
593 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM60917.CEL.gz
3.1 Mb
(ftp)
(http)
CEL
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
