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GEO accession:
Sample GSM60916
Query DataSets for GSM60916
Status
Public on Jun 14, 2005
Title
control virus-infected replicate 2 (MCF7)
Sample type
RNA
Source name
MCF7 cells
Organism
Homo sapiens
Characteristics
Mammary cell line
Extracted molecule
total RNA
Extraction protocol
Approximately 1x10^6 cells were infected with control adenovirus expressing GFP for 16 hours, then total RNA was isolated using RNEasy kit (Qiagen).
Label
biotin
Label protocol
Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Adenovirus-infected MCF7 cells
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Jun 14, 2005
Last update date
Jun 14, 2005
Contact name
Scott A. Ness
E-mail(s)
sness@salud.unm.edu
Phone
505-272-9883
Organization name
U. of New Mexico HSC
Department
Internal Medicine
Lab
Ness
Street address
MSC07 4025 - CRF 121
City
Albuquerque
State/province
NM
ZIP/Postal code
87131-0001
Country
USA
Platform ID
GPL96
Series (1)
GSE2815
cMyb and vMyb in MCF7 cells
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
2695.6
P
0.000258
AFFX-BioB-M_at
5269.2
P
0.00007
AFFX-BioB-3_at
3045.4
P
0.000052
AFFX-BioC-5_at
6208
P
0.000052
AFFX-BioC-3_at
5550.6
P
0.000052
AFFX-BioDn-5_at
6078.1
P
0.00007
AFFX-BioDn-3_at
33222.3
P
0.000052
AFFX-CreX-5_at
59027
P
0.000044
AFFX-CreX-3_at
84225.3
P
0.000044
AFFX-DapX-5_at
23.5
A
0.712257
AFFX-DapX-M_at
198.3
A
0.250796
AFFX-DapX-3_at
20.8
A
0.981719
AFFX-LysX-5_at
34.4
A
0.645547
AFFX-LysX-M_at
112.3
A
0.699394
AFFX-LysX-3_at
123.1
A
0.340661
AFFX-PheX-5_at
6.6
A
0.995002
AFFX-PheX-M_at
51.6
A
0.672921
AFFX-PheX-3_at
40
A
0.824672
AFFX-ThrX-5_at
16.9
A
0.772364
AFFX-ThrX-M_at
25.7
A
0.891021
Total number of rows:
22283
Table truncated, full table size
594 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM60916.CEL.gz
3.1 Mb
(ftp)
(http)
CEL
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