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| Status |
Public on Dec 28, 2022 |
| Title |
Ctrl, PD10, 3 |
| Sample type |
SRA |
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| Source name |
whole uterus
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| Organism |
Mus musculus |
| Characteristics |
tissue: whole uterus
genotype: Ezh2 f/f
treatment: Ctrl
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| Extracted molecule |
total RNA |
| Extraction protocol |
TruSeq stranded mRNA library
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
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| Data processing |
Trimmomatic was used to trim poor quality bases and remove low quality reads.
Quality check was performed using FastQC. Sample reads were aligned to the mouse genome (GRCm38_mouse) using HISAT2 and counted using FeatureCounts.
Finally, differential gene expression was analyzed using Edger.
Assembly: GRCm38_mouse
Supplementary files format and content: FeatureCounts
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| Submission date |
May 01, 2022 |
| Last update date |
Dec 28, 2022 |
| Contact name |
Qinglei Li |
| E-mail(s) |
qli@cvm.tamu.edu
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| Organization name |
Texas A&M University
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| Street address |
400 Bizzell St
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| City |
College station |
| ZIP/Postal code |
77840 |
| Country |
USA |
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| Platform ID |
GPL24247 |
| Series (1) |
| GSE201973 |
Mesenchymal EZH2 maintains uterine adenogenic homeostasis |
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| Relations |
| BioSample |
SAMN28017747 |
| SRA |
SRX15095381 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM6085296_Galaxy143-_Ctrl3_.tabular.txt.gz |
119.9 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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