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GEO accession:
Sample GSM60193
Query DataSets for GSM60193
Status
Public on Jun 10, 2005
Title
STAT1 binding in HeLa cell, 0 minute - rep2 of 5
Sample type
genomic
Channel 1
Source name
Chromatin immunoprecipitated DNA using STAT1 antibody
Organism
Homo sapiens
Characteristics
Chromatin immunoprecipitated DNA using STAT1 antibody
Extracted molecule
genomic DNA
Label
Cy5
Channel 2
Source name
input DNA
Organism
Homo sapiens
Characteristics
input DNA
Extracted molecule
genomic DNA
Label
Cy3
Description
Genome-wide location analysis of STAT1 binding using RenLab ENCODE PCR tiling array. Array ID is ENC524. Replicate 2 of 5.
Data processing
Single-Array Error Model
Submission date
Jun 03, 2005
Last update date
Jun 24, 2005
Contact name
Chunxu Qu
E-mail(s)
qchunxu@ucsd.edu
Phone
(858)822-5767
Organization name
Ludwig Institute for Cancer Research
Department
Gene Regulation
Lab
RenLab
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92093
Country
USA
Platform ID
GPL1454
Series (1)
GSE2730
ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells
Data table header descriptions
ID_REF
VALUE
log2 ratio
STATISTICS
X-statistics
P-VAL
p-value calculated using single array error model
F635_INT
normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT
normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN
F635 median intensity
F635_MEAN
F635 mean intensity
F635_SD
F635 standard deviation
B635_MEDIAN
B635 median intensity
B635_MEAN
B635 mean intensity
B635_SD
B635 standard deviation
F532_MEDIAN
F532 median intensity
F532_MEAN
F532 mean intensity
F532_SD
F532 standard deviation
B532_MEDIAN
B532 median intensity
B532_MEAN
B532 mean intensity
B532_SD
B532 standard deviation
Data table
ID_REF
VALUE
STATISTICS
P-VAL
F635_INT
F532_INT
F635_MEDIAN
F635_MEAN
F635_SD
B635_MEDIAN
B635_MEAN
B635_SD
F532_MEDIAN
F532_MEAN
F532_SD
B532_MEDIAN
B532_MEAN
B532_SD
1
0.741114
2.68804505e-01
1.08311920e-03
1277
764
1718
1704
611
72
84
58
1191
1160
283
196
199
53
2
0.906172
3.17743661e-01
1.44635264e-04
1756
937
2074
2044
865
69
82
58
1321
1274
437
189
194
53
3
0.810365
3.04053483e-01
2.61637281e-04
4798
2736
4342
4328
1311
78
91
66
2501
2469
586
197
203
77
4
0.866533
3.15888257e-01
1.56945438e-04
2115
1160
2317
2296
794
73
86
62
1428
1433
361
194
197
53
5
0.748658
2.82622730e-01
6.31902048e-04
2643
1573
2575
2659
751
69
81
58
1736
1728
384
195
196
52
6
-0.177048
-6.64757955e-02
7.75875009e-01
651
736
1075
1108
383
68
81
56
1165
1152
313
195
199
55
7
0.279436
9.47556363e-02
1.39861083e-01
460
379
925
926
388
71
83
55
825
798
262
191
193
52
8
-0.483694
-1.86535341e-01
9.83328922e-01
1190
1664
1577
1618
514
71
84
59
1800
1775
408
197
197
56
9
0.009440
3.57185240e-03
4.83748950e-01
460
457
887
895
281
72
84
61
895
903
145
195
199
56
10
0.155518
5.56041200e-02
2.62937632e-01
274
246
417
442
216
69
82
86
436
429
108
192
200
128
11
0.331811
1.16326817e-01
9.22508368e-02
769
611
1163
1273
576
75
94
75
977
1059
352
198
204
65
12
0.161633
6.44174927e-02
2.31213812e-01
4142
3703
3969
3768
1144
74
93
84
3283
3048
827
198
206
69
13
0.083099
3.35022008e-02
3.51162820e-01
1733
1636
2019
2020
387
74
87
59
1756
1767
233
197
203
56
14
0.338841
1.29324635e-01
7.00664408e-02
1094
865
1509
1543
468
70
82
56
1267
1231
340
195
201
52
15
0.681506
2.41457065e-01
2.93937056e-03
757
472
1323
1295
425
76
89
63
972
932
258
198
202
54
16
0.266370
9.69512229e-02
1.34365366e-01
866
720
1413
1359
547
79
90
58
1204
1145
377
203
208
60
17
0.020263
8.00072722e-03
4.63639075e-01
1434
1414
1735
1807
545
76
90
63
1616
1610
334
201
204
56
18
0.281182
9.88805358e-02
1.29660110e-01
384
316
798
791
288
72
86
59
675
681
184
199
201
51
19
0.336668
1.32656884e-01
6.51005090e-02
3099
2454
3109
3052
852
77
91
65
2408
2316
643
198
206
61
20
0.284913
1.06949185e-01
1.11224098e-01
1289
1058
1780
1701
666
78
89
58
1438
1369
466
199
202
54
Total number of rows:
25392
Table truncated, full table size
2525 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM60193.gpr.gz
2.1 Mb
(ftp)
(http)
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