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Sample GSM60193 Query DataSets for GSM60193
Status Public on Jun 10, 2005
Title STAT1 binding in HeLa cell, 0 minute - rep2 of 5
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using STAT1 antibody
Organism Homo sapiens
Characteristics Chromatin immunoprecipitated DNA using STAT1 antibody
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name input DNA
Organism Homo sapiens
Characteristics input DNA
Extracted molecule genomic DNA
Label Cy3
 
 
Description Genome-wide location analysis of STAT1 binding using RenLab ENCODE PCR tiling array. Array ID is ENC524. Replicate 2 of 5.
Data processing Single-Array Error Model
 
Submission date Jun 03, 2005
Last update date Jun 24, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE2730 ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells

Data table header descriptions
ID_REF
VALUE log2 ratio
STATISTICS X-statistics
P-VAL p-value calculated using single array error model
F635_INT normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN F635 median intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation

Data table
ID_REF VALUE STATISTICS P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD
1 0.741114 2.68804505e-01 1.08311920e-03 1277 764 1718 1704 611 72 84 58 1191 1160 283 196 199 53
2 0.906172 3.17743661e-01 1.44635264e-04 1756 937 2074 2044 865 69 82 58 1321 1274 437 189 194 53
3 0.810365 3.04053483e-01 2.61637281e-04 4798 2736 4342 4328 1311 78 91 66 2501 2469 586 197 203 77
4 0.866533 3.15888257e-01 1.56945438e-04 2115 1160 2317 2296 794 73 86 62 1428 1433 361 194 197 53
5 0.748658 2.82622730e-01 6.31902048e-04 2643 1573 2575 2659 751 69 81 58 1736 1728 384 195 196 52
6 -0.177048 -6.64757955e-02 7.75875009e-01 651 736 1075 1108 383 68 81 56 1165 1152 313 195 199 55
7 0.279436 9.47556363e-02 1.39861083e-01 460 379 925 926 388 71 83 55 825 798 262 191 193 52
8 -0.483694 -1.86535341e-01 9.83328922e-01 1190 1664 1577 1618 514 71 84 59 1800 1775 408 197 197 56
9 0.009440 3.57185240e-03 4.83748950e-01 460 457 887 895 281 72 84 61 895 903 145 195 199 56
10 0.155518 5.56041200e-02 2.62937632e-01 274 246 417 442 216 69 82 86 436 429 108 192 200 128
11 0.331811 1.16326817e-01 9.22508368e-02 769 611 1163 1273 576 75 94 75 977 1059 352 198 204 65
12 0.161633 6.44174927e-02 2.31213812e-01 4142 3703 3969 3768 1144 74 93 84 3283 3048 827 198 206 69
13 0.083099 3.35022008e-02 3.51162820e-01 1733 1636 2019 2020 387 74 87 59 1756 1767 233 197 203 56
14 0.338841 1.29324635e-01 7.00664408e-02 1094 865 1509 1543 468 70 82 56 1267 1231 340 195 201 52
15 0.681506 2.41457065e-01 2.93937056e-03 757 472 1323 1295 425 76 89 63 972 932 258 198 202 54
16 0.266370 9.69512229e-02 1.34365366e-01 866 720 1413 1359 547 79 90 58 1204 1145 377 203 208 60
17 0.020263 8.00072722e-03 4.63639075e-01 1434 1414 1735 1807 545 76 90 63 1616 1610 334 201 204 56
18 0.281182 9.88805358e-02 1.29660110e-01 384 316 798 791 288 72 86 59 675 681 184 199 201 51
19 0.336668 1.32656884e-01 6.51005090e-02 3099 2454 3109 3052 852 77 91 65 2408 2316 643 198 206 61
20 0.284913 1.06949185e-01 1.11224098e-01 1289 1058 1780 1701 666 78 89 58 1438 1369 466 199 202 54

Total number of rows: 25392

Table truncated, full table size 2525 Kbytes.




Supplementary file Size Download File type/resource
GSM60193.gpr.gz 2.1 Mb (ftp)(http) GPR

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