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Sample GSM60190 Query DataSets for GSM60190
Status Public on Jun 10, 2005
Title dimethylated K4 histone H3 in HeLa cell, 30 minutes - rep2 of 3
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using dimethyl-H3K4 antibody
Organism Homo sapiens
Characteristics Chromatin immunoprecipitated DNA using dimethyl-H3K4 antibody
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name input DNA
Organism Homo sapiens
Characteristics input DNA
Extracted molecule genomic DNA
Label Cy3
 
 
Description Genome-wide location analysis of dimethyl-H3K4 binding using RenLab ENCODE PCR tiling array. Array ID is ENC773. Replicate 2 of 3.
Data processing Single-Array Error Model
 
Submission date Jun 03, 2005
Last update date Jun 24, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE2730 ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells

Data table header descriptions
ID_REF
VALUE log2 ratio
STATISTICS X-statistics
P-VAL p-value calculated using single array error model
F635_INT normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN F635 median intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation

Data table
ID_REF VALUE STATISTICS P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD
1 0.352459 1.29807600e-01 1.93527576e-01 712.41596 557.99822 786 811 305 74 100 98 1578 1611 378 416 429 136
2 0.232463 8.73618639e-02 2.80238236e-01 959.05347 816.32783 1058 1075 398 75 100 90 1978 1991 476 414 422 129
3 -0.515584 -1.89574216e-01 8.96745613e-01 1552.08990 2218.82478 1814 1831 689 76 103 100 4076 4060 1156 415 422 129
4 -0.103242 -3.83663849e-02 6.00890834e-01 950.48394 1020.99491 1031 1082 409 77 102 93 2341 2294 639 418 427 129
5 -0.067937 -2.62179474e-02 5.69343392e-01 1105.35450 1158.65076 1256 1244 431 77 105 131 2507 2523 504 433 441 153
6 0.273222 9.87819982e-02 2.55194612e-01 1070.32544 885.66174 1222 1185 499 80 100 83 2142 2109 683 428 433 127
7 0.813018 2.85311192e-01 2.86401964e-02 846.16506 481.62872 904 923 376 85 108 94 1486 1499 355 421 432 133
8 -0.281126 -1.05742238e-01 7.59473875e-01 1039.64712 1263.31969 1196 1202 520 83 105 95 2761 2673 591 422 431 137
9 -0.071840 -2.41739199e-02 5.63985750e-01 318.55850 334.82289 435 466 241 83 103 86 1217 1213 295 421 430 135
10 0.688838 1.81631782e-01 1.13081989e-01 207.43454 128.68272 452 468 230 85 106 88 799 816 222 408 415 117
11 0.219885 8.08091479e-02 2.95126290e-01 693.24558 595.24432 761 810 333 85 112 105 1686 1662 397 413 431 158
12 0.333167 1.30998704e-01 1.91356861e-01 2313.18876 1836.19121 2576 2602 612 87 128 208 3543 3454 569 423 440 196
13 0.379488 1.46158394e-01 1.65047297e-01 1069.21454 821.91622 1157 1185 359 86 116 124 2016 2002 339 415 429 158
14 0.447319 1.49967724e-01 1.58823059e-01 985.43508 722.72231 1029 1098 526 85 104 81 1754 1849 801 407 415 126
15 0.874634 2.89739428e-01 2.67617804e-02 958.66546 522.84874 988 1029 461 84 101 78 1522 1543 577 402 414 123
16 0.672073 2.39810737e-01 5.50244083e-02 1012.19110 635.25528 1062 1100 416 83 105 90 1749 1713 491 406 415 124
17 0.306736 1.17101314e-01 2.17606531e-01 1125.59430 910.00766 1231 1239 425 85 116 160 2150 2132 438 417 432 250
18 1.006295 3.28640422e-01 1.42661624e-02 667.31223 332.20352 740 761 355 91 109 86 1206 1207 337 410 421 127
19 0.076745 2.97067545e-02 4.21541963e-01 1541.29159 1461.44471 1714 1727 461 89 115 122 3000 2929 718 411 421 145
20 -0.084137 -3.23184761e-02 5.85254132e-01 1071.10499 1135.42890 1254 1216 382 85 109 92 2492 2459 554 404 411 128

Total number of rows: 25392

Table truncated, full table size 2843 Kbytes.




Supplementary file Size Download File type/resource
GSM60190.gpr.gz 2.3 Mb (ftp)(http) GPR

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