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Sample GSM60180 Query DataSets for GSM60180
Status Public on Jun 10, 2005
Title acetylated histone H4 in HeLa cell, 0 minute - rep2 of 3
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using acetylated histone H4 antibody
Organism Homo sapiens
Characteristics Chromatin immunoprecipitated DNA using acetylated histone H4 antibody
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name input DNA
Organism Homo sapiens
Characteristics input DNA
Extracted molecule genomic DNA
Label Cy3
 
 
Description Genome-wide location analysis of acetylated histone H4 binding using RenLab ENCODE PCR tiling array. Array ID is ENC766. Replicate 2 of 3.
Data processing Single-Array Error Model
 
Submission date Jun 03, 2005
Last update date Jun 24, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE2730 ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells

Data table header descriptions
ID_REF
VALUE log2 ratio
STATISTICS X-statistics
P-VAL p-value calculated using single array error model
F635_INT normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN F635 median intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation

Data table
ID_REF VALUE STATISTICS P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD
1 0.339262 1.17086811e-01 9.07666686e-02 735.1765 581.1169 1369 1334 476 81 94 74 1685 1644 490 665 669 178
2 0.123626 4.89617429e-02 2.88186521e-01 1749.8862 1606.1813 1929 1935 501 82 99 87 2223 2193 489 649 659 177
3 0.051358 2.06435467e-02 4.06887669e-01 6485.4295 6258.6176 4842 4619 1462 81 94 74 4571 4374 1267 641 649 170
4 0.184558 7.08173079e-02 2.09522595e-01 2170.1826 1909.5843 2243 2176 925 83 101 107 2485 2357 808 644 652 180
5 0.112468 4.36702970e-02 3.09132428e-01 1901.7577 1759.1342 2115 2016 773 80 94 73 2239 2280 636 649 655 173
6 0.132239 5.08958075e-02 2.80701270e-01 1700.5508 1551.6071 1961 1908 680 80 94 73 2203 2164 686 648 655 169
7 -0.042776 -1.43869030e-02 5.65199533e-01 405.2925 417.4894 1010 1015 339 81 101 86 1462 1488 341 644 658 180
8 0.111344 4.43978965e-02 3.06213032e-01 2896.7842 2681.6260 2618 2564 703 80 101 93 2873 2738 743 656 663 183
9 -0.007291 -1.62683708e-03 5.07405315e-01 195.7893 196.7813 641 627 325 79 94 67 1147 1156 394 650 657 178
10 0.066870 1.86701512e-02 4.15647689e-01 176.6104 168.6112 533 557 217 82 96 69 1027 1033 225 636 638 174
11 0.047745 1.66455919e-02 4.24678564e-01 792.2249 766.4360 1243 1357 601 82 97 72 1642 1745 538 646 652 177
12 -0.373142 -1.47588154e-01 9.53918061e-01 2124.5113 2751.6035 2148 2087 526 82 104 136 2791 2773 612 655 665 197
13 0.174214 6.73647167e-02 2.21041002e-01 1033.9016 916.2955 1513 1522 385 85 104 118 1826 1837 389 650 660 188
14 -0.152761 -5.52442634e-02 7.35776571e-01 1145.4945 1273.4408 1533 1573 804 87 98 62 1982 2023 702 645 652 177
15 -0.094686 -3.31779672e-02 6.47502195e-01 550.6403 587.9918 1156 1165 410 82 98 72 1615 1623 406 640 647 174
16 0.123184 4.85902979e-02 2.89634801e-01 1402.5477 1287.7616 1745 1748 448 88 107 104 2057 2040 399 656 669 183
17 0.416029 1.57530633e-01 3.61247102e-02 1380.2940 1034.5093 1766 1752 519 87 103 85 1957 1907 514 656 658 184
18 0.121499 3.89664812e-02 3.28291082e-01 337.4419 310.1875 937 955 309 90 108 81 1333 1365 302 637 655 185
19 0.157730 6.14671834e-02 2.41530802e-01 3002.6768 2691.7029 2783 2636 1129 87 97 64 2884 2726 951 640 647 178
20 0.217897 8.38251271e-02 1.69407854e-01 1638.3417 1408.6756 1910 1892 636 87 106 110 2129 2090 616 646 661 186

Total number of rows: 25392

Table truncated, full table size 2817 Kbytes.




Supplementary file Size Download File type/resource
GSM60180.gpr.gz 2.2 Mb (ftp)(http) GPR

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