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Sample GSM60170 Query DataSets for GSM60170
Status Public on Jun 10, 2005
Title acetylated histone H3 in HeLa cell, 0 minute - rep2 of 5
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using acetylated histone H3 antibody
Organism Homo sapiens
Characteristics Chromatin immunoprecipitated DNA using acetylated histone H3 antibody
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name input DNA
Organism Homo sapiens
Characteristics input DNA
Extracted molecule genomic DNA
Label Cy3
 
 
Description Genome-wide location analysis of acetylated histone H3 binding using RenLab ENCODE PCR tiling array. Array ID is ENC589. Replicate 2 of 5.
Data processing Single-Array Error Model
 
Submission date Jun 03, 2005
Last update date Jun 24, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE2730 ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells

Data table header descriptions
ID_REF
VALUE log2 ratio
STATISTICS X-statistics
P-VAL p-value calculated using single array error model
F635_INT normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN F635 median intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation

Data table
ID_REF VALUE STATISTICS P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD
1 0.013776 3.49447671e-03 4.87152082e-01 253.16256 250.75674 810 864 387 78 91 64 1457 1423 376 486 497 135
2 0.121344 4.11639936e-02 3.52183817e-01 615.59760 565.93788 1299 1286 510 82 92 62 1796 1802 434 493 503 144
3 -0.147218 -5.70353516e-02 7.00460821e-01 2143.97023 2374.30061 2560 2564 915 77 91 62 3164 3085 857 488 502 145
4 -0.087264 -3.30412819e-02 6.19649260e-01 1105.88207 1174.83747 1645 1669 587 73 86 59 2305 2277 512 485 493 131
5 0.048239 1.62037004e-02 4.40635395e-01 811.87074 785.17334 1497 1440 705 74 87 60 2062 1976 617 478 487 130
6 -0.076066 -2.71977127e-02 5.98975556e-01 690.16359 727.52901 1353 1335 482 76 90 65 1961 1930 455 482 494 142
7 0.188688 5.35741910e-02 3.10715625e-01 282.94797 248.25948 917 925 324 84 93 60 1384 1410 332 480 498 141
8 -0.752582 -2.71286662e-01 9.93800827e-01 1021.70199 1721.36853 1628 1565 599 80 91 61 2816 2647 723 476 491 140
9 -0.336553 -9.72314103e-02 8.14936533e-01 253.90009 320.60874 819 849 342 78 89 57 1525 1527 336 478 494 151
10 0.058890 1.35420674e-02 4.50331160e-01 125.77228 120.74168 406 414 201 76 87 59 882 900 232 475 482 128
11 1.072833 3.34032914e-01 1.03860228e-03 980.08153 465.91562 1658 1665 639 80 121 158 1671 1701 515 480 515 203
12 0.204193 7.95680315e-02 2.31650390e-01 1489.58700 1292.99780 2008 2018 481 78 93 63 2297 2359 520 488 512 165
13 -0.059985 -2.26112366e-02 5.82549580e-01 983.46513 1025.21825 1579 1569 486 78 92 69 2185 2169 517 490 507 158
14 -0.184874 -6.02254448e-02 7.10597537e-01 594.69017 675.99473 1239 1244 540 75 87 59 1897 1885 603 484 500 137
15 0.310386 1.03682192e-01 1.69612911e-01 481.79529 388.53236 1185 1154 388 76 91 60 1631 1621 327 491 501 136
16 0.229309 5.12189358e-02 3.18422986e-01 326.89149 278.85260 925 975 554 74 87 58 1529 1463 554 481 494 138
17 0.294503 9.72135899e-02 1.85107326e-01 721.66735 588.41380 1387 1382 611 76 89 59 1880 1819 507 487 501 141
18 -0.030100 -7.26080198e-03 5.26680020e-01 183.28639 187.15054 689 704 283 78 90 61 1259 1274 323 483 490 134
19 -0.151190 -5.73567037e-02 7.01489195e-01 2151.95237 2389.71097 2727 2579 1112 81 96 65 3252 3095 1027 485 504 155
20 -0.218934 -8.23152984e-02 7.75997617e-01 971.05001 1130.17915 1506 1551 530 79 92 60 2243 2237 509 478 499 165

Total number of rows: 25392

Table truncated, full table size 2837 Kbytes.




Supplementary file Size Download File type/resource
GSM60170.gpr.gz 2.2 Mb (ftp)(http) GPR

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