|
| Status |
Public on Sep 29, 2010 |
| Title |
Bcl6 +/+ BCR-ABL1-driven ALL 2 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
genomic DNA from splenocytes [control]
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57Bl6/129Sv
age: 4 weeks
tissue: spleen
cell type: splenocyte
disease state: normal, untransformed
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA were extracted using PureLink from Invitrogen
|
| Label |
Cy3
|
| Label protocol |
Performed according to NimbleGen protocols (performed by MOgeneLC)
|
| |
|
| Channel 2 |
| Source name |
BCL6 +/+ BCR-ABL1-driven ALL [test]
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57Bl6/129Sv
age: 5 months
cell culture: BCR-ABL1 transformed pre-B cells
disease state: BCR-ABL1-driven ALL
genotype/variation: BCL6 wildtype
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA were extracted using PureLink from Invitrogen
|
| Label |
Cy5
|
| Label protocol |
Performed according to NimbleGen protocols (performed by MOgeneLC)
|
| |
|
| |
| Hybridization protocol |
Performed according to NimbleGen protocols (performed by MOgeneLC)
|
| Scan protocol |
Scanning was performed in accordance with the NimbleGen protocol
|
| Description |
Processed data file: WT 372032A02_SLOT46_segMNT.txt
|
| Data processing |
Analyzed with Nexus Biodiscovery program using the FASST-segmentation algorithm
|
| |
|
| Submission date |
Sep 28, 2010 |
| Last update date |
Sep 29, 2010 |
| Contact name |
Markus Müschen |
| E-mail(s) |
mmuschen@chla.usc.edu
|
| Phone |
+ 1 323 361 5592
|
| Fax |
+1 323 361 1516
|
| URL |
http://www.lymphocytes.de/
|
| Organization name |
University of Southern California
|
| Department |
Childrens Hospital Los Angeles
|
| Lab |
Müschen Lab
|
| Street address |
4650 Sunset Blvd
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90027 |
| Country |
USA |
| |
|
| Platform ID |
GPL10989 |
| Series (1) |
| GSE24400 |
Comparison of copy number variations between wildtype and BCL6 knockout BCR-ABL1-driven acute lymphoblastic leukemia |
|
