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Sample GSM5896870

Query DataSets for GSM5896870

Status

Public on Jun 01, 2022

Title

OAA-treated Aged Digit D21 [C1]

Sample type

SRA

Source name

Aged mice injected daily D10-D21 with OAA

Organism

Mus musculus

Characteristics

day: Day 21
agent: OAA

Extracted molecule

total RNA

Extraction protocol

enzymatic permeabilization (manufacturer's protocol)
10X Visium Spatial Gene Expression (manufacturer's protocol)

Library strategy

RNA-Seq

Library source

transcriptomic

Library selection

cDNA

Instrument model

Illumina HiSeq 2000

Data processing

SpaceRanger
Seurat
Genome_build: mm10
Supplementary_files_format_and_content: spatial folder, matrix.h5 files and text file for digit coordinates and genotype

Submission date

Feb 11, 2022

Last update date

Jun 01, 2022

Contact name

Robert J Tower

Organization name

UTSW

Street address

5323 Harry Hines Blvd

City

Dallas

ZIP/Postal code

75390

Country

USA

Platform ID

GPL13112

Series (1)

GSE180682

Spatial transcriptomics reveals increased energetic requirements underpinning age-dependent declines in digit regeneration rescued through administration of OAA

Relations

BioSample

SAMN25871309

SRA

SRX14148712

Supplementary file	Size	Download	File type/resource
GSM5896870_C1_aligned_fiducials.jpg.gz	1.2 Mb	(ftp)(http)	JPG
GSM5896870_C1_barcodeC1.csv.gz	7.7 Kb	(ftp)(http)	CSV
GSM5896870_C1_detected_tissue_image.jpg.gz	1.7 Mb	(ftp)(http)	JPG
GSM5896870_C1_filtered_feature_bc_matrix.h5	3.4 Mb	(ftp)(http)	H5
GSM5896870_C1_scalefactors_json.json.gz	169 b	(ftp)(http)	JSON
GSM5896870_C1_tissue_hires_image.png.gz	2.9 Mb	(ftp)(http)	PNG
GSM5896870_C1_tissue_lowres_image.png.gz	363.9 Kb	(ftp)(http)	PNG
GSM5896870_C1_tissue_positions_list.csv.gz	58.6 Kb	(ftp)(http)	CSV
SRA Run Selector
Processed data provided as supplementary file
Raw data are available in SRA