|
| Status |
Public on Oct 24, 2022 |
| Title |
121_rpmi |
| Sample type |
SRA |
| |
|
| Source name |
PBMC
|
| Organism |
Sus scrofa |
| Characteristics |
cell type: PBMC
status: control
Sex: M
group: rpmi
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol + RNeasy Mini Kit Qiagen
Kapa Stranded mRNA
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
AQ4012
|
| Data processing |
Mappings using STAR/2.5.3a against Sscrofa11.1
Gene quantification was performed with RSEM/1.3.0
Annotation Ensembl release 100
Genome_build: Sscrofa11.1
Supplementary_files_format_and_content: COUNTS_genes_RODRIGUEZFER_01.tsv (raw counts)
|
| |
|
| Submission date |
Feb 10, 2022 |
| Last update date |
Oct 24, 2022 |
| Contact name |
Jordi Argilaguet |
| E-mail(s) |
jordi.argilaguet@gmail.com
|
| Organization name |
IRTA
|
| Department |
CReSA
|
| Street address |
Campus de la Universitat Autònoma de Barcelona, Edifici CReSA s/n
|
| City |
Cerdanyola del Vallès (Bellaterra) |
| State/province |
Spain |
| ZIP/Postal code |
08193 |
| Country |
Spain |
| |
|
| Platform ID |
GPL26351 |
| Series (1) |
| GSE196473 |
Transcriptomic profiles of porcine PBMC from nonimmune and ASFV-immune pigs upon in vitro stimulation |
|
| Relations |
| BioSample |
SAMN25829291 |
| SRA |
SRX14127121 |
