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| Status |
Public on Feb 11, 2022 |
| Title |
normal adrenal cortex 3 |
| Sample type |
SRA |
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| Source name |
normal adrenal cortex
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| Organism |
Canis lupus familiaris |
| Characteristics |
disease: healthy
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| Extracted molecule |
total RNA |
| Extraction protocol |
cells were trypsinized and stored in RLT. Total RNA was isolated using a RNeasy Mini Kit (Qiagen).
Sequencing libraries were prepared using CEL-Seq2
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
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| Description |
NAC3
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| Data processing |
reads were demultiplexed and aligned to canine cDNA reference using the BWA
Genome_build: CanFam3.1
Supplementary_files_format_and_content: raw counts
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| Submission date |
Feb 04, 2022 |
| Last update date |
Feb 11, 2022 |
| Contact name |
Frank van Steenbeek |
| E-mail(s) |
f.g.vansteenbeek@uu.nl
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| Phone |
0302532848
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| Organization name |
Utrecht University
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| Street address |
Yalelaan 104
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| City |
Utrecht |
| State/province |
Select State/Province |
| ZIP/Postal code |
3584 CM |
| Country |
Netherlands |
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| Platform ID |
GPL21400 |
| Series (1) |
| GSE196108 |
Transcriptome sequencing reveals two subtypes of cortisol-secreting adrenocortical tumors in dogs and identifies CYP26B1 as a potential new therapeutic target |
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| Relations |
| BioSample |
SAMN25648827 |
| SRA |
SRX14042202 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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