|
| Status |
Public on Feb 11, 2022 |
| Title |
canine cortisol-secreting adrenocortical tumor 12 |
| Sample type |
SRA |
| |
|
| Source name |
cortisol-secreting adrenocortical tumor
|
| Organism |
Canis lupus familiaris |
| Characteristics |
disease: canine cortisol-secreting adrenocortical tumor
|
| Extracted molecule |
total RNA |
| Extraction protocol |
cells were trypsinized and stored in RLT. Total RNA was isolated using a RNeasy Mini Kit (Qiagen).
Sequencing libraries were prepared using CEL-Seq2
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
ACT12
|
| Data processing |
reads were demultiplexed and aligned to canine cDNA reference using the BWA
Genome_build: CanFam3.1
Supplementary_files_format_and_content: raw counts
|
| |
|
| Submission date |
Feb 04, 2022 |
| Last update date |
Feb 11, 2022 |
| Contact name |
Frank van Steenbeek |
| E-mail(s) |
f.g.vansteenbeek@uu.nl
|
| Phone |
0302532848
|
| Organization name |
Utrecht University
|
| Street address |
Yalelaan 104
|
| City |
Utrecht |
| State/province |
Select State/Province |
| ZIP/Postal code |
3584 CM |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL21400 |
| Series (1) |
| GSE196108 |
Transcriptome sequencing reveals two subtypes of cortisol-secreting adrenocortical tumors in dogs and identifies CYP26B1 as a potential new therapeutic target |
|
| Relations |
| BioSample |
SAMN25648867 |
| SRA |
SRX14042162 |
