|
| Status |
Public on Oct 28, 2022 |
| Title |
frpe_3d_5f |
| Sample type |
SRA |
| |
|
| Source name |
fRPE derived reprogramming intermediate
|
| Organism |
Homo sapiens |
| Characteristics |
treatment: 5F
Stage: day3
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Droplet-based snRNA-seq libraries were prepared using the Chromium Single Cell 3’ v2 according to the manufacturer’s protocol.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Data processing |
Single-cell RNA-seq data was processed using mkfastq and count command from 10X Genomics CellRanger v3.0.1.
Genome_build: hg38
|
| |
|
| Submission date |
Dec 30, 2021 |
| Last update date |
Oct 28, 2022 |
| Contact name |
Guoping Fan |
| E-mail(s) |
guoping.fan@gmail.com
|
| Organization name |
university of california, los angeles
|
| Department |
Human Genetics
|
| Street address |
695 Charles E Young Drive South
|
| City |
los angeles |
| State/province |
ca |
| ZIP/Postal code |
90095 |
| Country |
USA |
| |
|
| Platform ID |
GPL20301 |
| Series (2) |
| GSE192814 |
Direct reprogramming of human fetal retinal pigment epithelial cells into photoreceptor-like cells [scRNA-seq] |
| GSE192882 |
Direct reprogramming of human fetal retinal pigment epithelial cells into photoreceptor-like cells |
|
| Relations |
| BioSample |
SAMN24526409 |
| SRA |
SRX13558192 |
