|
| Status |
Public on Jul 23, 2024 |
| Title |
Diaphragm |
| Sample type |
SRA |
| |
|
| Source name |
Diaphragm
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
age: 2 months
Sex: male
tissue: Diaphragm
|
| Treatment protocol |
Not applicable
|
| Growth protocol |
Not applicable
|
| Extracted molecule |
total RNA |
| Extraction protocol |
10x Genomics Chromium single-cell preparation
NGS Illumina Next Seq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
RNA was isolated from the meninges of 10 mice.
|
| Data processing |
Illumina bcl2fastq software used for basecalling
UMI count matrices generated using the Cellranger count pipeline 3.0.2. The output from the cellranger count pipeline has been uploaded as a folder containing count, barcode, and gene matrices.
Genome_build: mm10
Supplementary_files_format_and_content: Compressed folders containing the raw UMI count matrices for each sample, as well as matrices with gene symbols and barcodes.
|
| |
|
| Submission date |
Nov 29, 2021 |
| Last update date |
Jul 23, 2024 |
| Contact name |
Jonathan Kipnis |
| Organization name |
Washington University in Saint Louis
|
| Department |
Pathology and Immunology
|
| Lab |
Kipnis Lab
|
| Street address |
4515 McKinley Ave
|
| City |
Saint Louis |
| State/province |
MO |
| ZIP/Postal code |
63110 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (2) |
| GSE189812 |
Engineered T cell therapy for central nervous system injury [control tissues TCR scRNA-seq] |
| GSE216391 |
Engineered T cell therapy for central nervous system injury |
|
| Relations |
| BioSample |
SAMN23492357 |
| SRA |
SRX13255351 |
