|
| Status |
Public on Sep 21, 2010 |
| Title |
cmt3_2 |
| Sample type |
RNA |
| |
|
| Source name |
cmt3
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
genotype: cmt3 mutant
tissue: Young leaves
|
| Treatment protocol |
No treatment.
|
| Growth protocol |
4 weeks on soil, long day.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Used the Rneasy Plant Mini kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
According to standard NimbleGen protocols (www.nimblegen.com).
|
| |
|
| Hybridization protocol |
According to standard NimbleGen protocols (www.nimblegen.com)
|
| Scan protocol |
Used Agilent Microarray Scanner.
|
| Description |
RMA-normalized
|
| Data processing |
Arrays were processed using Nimblegen's standard protocol for Nimblescan 2.4 ChIP data extraction.
|
| |
|
| Submission date |
Jul 15, 2010 |
| Last update date |
Sep 21, 2010 |
| Contact name |
Soichi Inagaki |
| E-mail(s) |
soinagak@bs.naist.jp
|
| Organization name |
Nara Institute of Science and Technology
|
| Department |
Graduate School of Biological Sciences
|
| Street address |
8916-5, Takayama-cho
|
| City |
Ikoma |
| State/province |
Nara |
| ZIP/Postal code |
630-0192 |
| Country |
Japan |
| |
|
| Platform ID |
GPL10689 |
| Series (2) |
| GSE22957 |
Genome-wide expression analysis in kyp and cmt3 mutants of Arabidopsis thaliana |
| GSE23030 |
Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome |
|
